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rnai-screen-tf/results/cellprofiler/cellprofiler.mk
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| # Behavior: empty values are considered false | |
| controls_only = yes | |
| # Paths | |
| PREFIX_OUTPUT = 2017-02-20 | |
| PREFIX_SRC = ../../src | |
| IMAGES = ../z_projection | |
| PIPELINE = $(PREFIX_SRC)/image-processing-pipeline.cpproj | |
| FILELIST = $(PREFIX_OUTPUT)/filelist | |
| # Executables | |
| cellprofiler = cellprofiler | |
| .PHONY: cellprofiler | |
| cellprofiler : $(FILELIST) | |
| $(cellprofiler) \ | |
| --pipeline=$(PIPELINE) \ | |
| --output-directory=$(PREFIX_OUTPUT) \ | |
| --file-list=$(FILELIST) | |
| .PHONY : filelist | |
| filelist : $(FILELIST) | |
| $(FILELIST) : $(IMAGES) | |
| ifneq ($(CLUSTER),) | |
| find $< -type f | sort > $@ | |
| else | |
| #find $< -type f -regex '^502[^_]_(J18|I09|H09|N22|E20|M13|K11)' | sort > $@ | |
| find $< -type f -regex '.*/502[^_]+_J18_S08.*' | sort > $@ | |
| endif |