diff --git a/README.md b/README.md index ff68ed0..4f2acf9 100644 --- a/README.md +++ b/README.md @@ -58,13 +58,14 @@ Type the `make help` to see a list of options: Usage: make [TARGET] ... Targets: -all (Default) Run full pipeline from image processing to plots. -help Show this help. -z-projection Generate maximum intensity projection images. -cellprofiler Collect statistics about all images. -gui-cellprofiler Interactively run CellProfiler. -stats Find significant wells from cellprofiler measurements. -clean-all Delete all output. +all (Default) Run full pipeline from image processing to plots. +help Show this help. +z-projection Generate maximum intensity projection images. +cellprofiler Collect statistics about all images. +gui-cp Interactively run CellProfiler. +gui-cpa Interactively run CellProfiler Analyst. +stats Find significant wells from cellprofiler measurements. +clean-all Delete all output. ``` Run the `Makefile` in this directory to generate all results.