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You are using fMRIPrep-1.5.9, and a newer version of fMRIPrep is available: 20.0.5.
Please check out our documentation about how and when to upgrade:
https://fmriprep.readthedocs.io/en/latest/faq.html#upgrading
WARNING: Version 1.5.9 of fMRIPrep (current) has been FLAGGED
(reason: Phase-difference fieldmap bug).
That means some severe flaw was found in it and we strongly
discourage its usage.
Although ``--fs-no-reconall`` was not set (i.e., FreeSurfer is to be run), no FreeSurfer output space (valid values are: fsnative, fsaverage, fsaverage5, fsaverage6) was selected. Adding default "fsaverage5" to the list of output spaces.
Process Process-2:
Traceback (most recent call last):
File "/usr/local/miniconda/lib/python3.7/multiprocessing/process.py", line 297, in _bootstrap
self.run()
File "/usr/local/miniconda/lib/python3.7/multiprocessing/process.py", line 99, in run
self._target(*self._args, **self._kwargs)
File "/usr/local/miniconda/lib/python3.7/site-packages/fmriprep/cli/run.py", line 669, in build_workflow
work_dir=str(work_dir),
File "/usr/local/miniconda/lib/python3.7/site-packages/fmriprep/workflows/base.py", line 265, in init_fmriprep_wf
use_syn=use_syn,
File "/usr/local/miniconda/lib/python3.7/site-packages/fmriprep/workflows/base.py", line 622, in init_single_subject_wf
use_syn=use_syn,
File "/usr/local/miniconda/lib/python3.7/site-packages/fmriprep/workflows/bold/base.py", line 435, in init_func_preproc_wf
tr=metadata.get("RepetitionTime")),
File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 611, in __init__
from_file=from_file, resource_monitor=resource_monitor, **inputs
File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 183, in __init__
self.inputs = self.input_spec(**inputs)
File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/specs.py", line 66, in __init__
super(BaseTraitedSpec, self).__init__(**kwargs)
File "/usr/local/miniconda/lib/python3.7/site-packages/traits/trait_handlers.py", line 172, in error
value )
traits.trait_errors.TraitError: The 'tr' trait of a FunctionalSummaryInputSpec instance must be a float, but a value of None <class 'NoneType'> was specified.