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hw7/error_3308576_4294967294.log
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You are using fMRIPrep-1.5.9, and a newer version of fMRIPrep is available: 20.0.5. | |
Please check out our documentation about how and when to upgrade: | |
https://fmriprep.readthedocs.io/en/latest/faq.html#upgrading | |
WARNING: Version 1.5.9 of fMRIPrep (current) has been FLAGGED | |
(reason: Phase-difference fieldmap bug). | |
That means some severe flaw was found in it and we strongly | |
discourage its usage. | |
Although ``--fs-no-reconall`` was not set (i.e., FreeSurfer is to be run), no FreeSurfer output space (valid values are: fsaverage5, fsaverage6, fsnative, fsaverage) was selected. Adding default "fsaverage5" to the list of output spaces. | |
/usr/local/miniconda/lib/python3.7/site-packages/scipy/fftpack/basic.py:160: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. | |
z[index] = x | |
/usr/local/miniconda/lib/python3.7/site-packages/nipype/algorithms/confounds.py:1182: FutureWarning: `rcond` parameter will change to the default of machine precision times ``max(M, N)`` where M and N are the input matrix dimensions. | |
To use the future default and silence this warning we advise to pass `rcond=None`, to keep using the old, explicitly pass `rcond=-1`. | |
betas = np.linalg.lstsq(X, data.T)[0] | |
/usr/local/miniconda/lib/python3.7/site-packages/nipype/algorithms/confounds.py:1182: FutureWarning: `rcond` parameter will change to the default of machine precision times ``max(M, N)`` where M and N are the input matrix dimensions. | |
To use the future default and silence this warning we advise to pass `rcond=None`, to keep using the old, explicitly pass `rcond=-1`. | |
betas = np.linalg.lstsq(X, data.T)[0] | |
/usr/local/miniconda/lib/python3.7/site-packages/nipype/algorithms/confounds.py:1182: FutureWarning: `rcond` parameter will change to the default of machine precision times ``max(M, N)`` where M and N are the input matrix dimensions. | |
To use the future default and silence this warning we advise to pass `rcond=None`, to keep using the old, explicitly pass `rcond=-1`. | |
betas = np.linalg.lstsq(X, data.T)[0] | |
/usr/local/miniconda/lib/python3.7/site-packages/nipype/algorithms/confounds.py:1182: FutureWarning: `rcond` parameter will change to the default of machine precision times ``max(M, N)`` where M and N are the input matrix dimensions. | |
To use the future default and silence this warning we advise to pass `rcond=None`, to keep using the old, explicitly pass `rcond=-1`. | |
betas = np.linalg.lstsq(X, data.T)[0] | |
/usr/local/miniconda/lib/python3.7/site-packages/nipype/algorithms/confounds.py:1182: FutureWarning: `rcond` parameter will change to the default of machine precision times ``max(M, N)`` where M and N are the input matrix dimensions. | |
To use the future default and silence this warning we advise to pass `rcond=None`, to keep using the old, explicitly pass `rcond=-1`. | |
betas = np.linalg.lstsq(X, data.T)[0] | |
/usr/local/miniconda/lib/python3.7/site-packages/nipype/algorithms/confounds.py:1182: FutureWarning: `rcond` parameter will change to the default of machine precision times ``max(M, N)`` where M and N are the input matrix dimensions. | |
To use the future default and silence this warning we advise to pass `rcond=None`, to keep using the old, explicitly pass `rcond=-1`. | |
betas = np.linalg.lstsq(X, data.T)[0] | |
/usr/local/miniconda/lib/python3.7/site-packages/nipype/algorithms/confounds.py:1182: FutureWarning: `rcond` parameter will change to the default of machine precision times ``max(M, N)`` where M and N are the input matrix dimensions. | |
To use the future default and silence this warning we advise to pass `rcond=None`, to keep using the old, explicitly pass `rcond=-1`. | |
betas = np.linalg.lstsq(X, data.T)[0] | |
/usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. | |
warnings.warn("No contour levels were found" | |
/usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. | |
warnings.warn("No contour levels were found" | |
/usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. | |
warnings.warn("No contour levels were found" | |
/usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. | |
warnings.warn("No contour levels were found" | |
/usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. | |
warnings.warn("No contour levels were found" | |
/usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. | |
warnings.warn("No contour levels were found" | |
/usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. | |
warnings.warn("No contour levels were found" | |
/usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. | |
warnings.warn("No contour levels were found" | |
/usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. | |
warnings.warn("No contour levels were found" | |
/usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. | |
warnings.warn("No contour levels were found" | |
/usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. | |
warnings.warn("No contour levels were found" | |
/usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. | |
warnings.warn("No contour levels were found" | |
/usr/local/miniconda/lib/python3.7/site-packages/nipype/algorithms/confounds.py:1182: FutureWarning: `rcond` parameter will change to the default of machine precision times ``max(M, N)`` where M and N are the input matrix dimensions. | |
To use the future default and silence this warning we advise to pass `rcond=None`, to keep using the old, explicitly pass `rcond=-1`. | |
betas = np.linalg.lstsq(X, data.T)[0] | |
/usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. | |
warnings.warn("No contour levels were found" | |
/usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. | |
warnings.warn("No contour levels were found" | |
/usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. | |
warnings.warn("No contour levels were found" | |
/usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. | |
warnings.warn("No contour levels were found" | |
/usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. | |
warnings.warn("No contour levels were found" | |
/usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. | |
warnings.warn("No contour levels were found" | |
/usr/local/miniconda/lib/python3.7/site-packages/scipy/fftpack/basic.py:160: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. | |
z[index] = x | |
/usr/local/miniconda/lib/python3.7/site-packages/scipy/fftpack/basic.py:160: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. | |
z[index] = x | |
/usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. | |
warnings.warn("No contour levels were found" | |
/usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. | |
warnings.warn("No contour levels were found" | |
/usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. | |
warnings.warn("No contour levels were found" | |
/usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. | |
warnings.warn("No contour levels were found" | |
/usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. | |
warnings.warn("No contour levels were found" | |
/usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. | |
warnings.warn("No contour levels were found" | |
/usr/local/miniconda/lib/python3.7/site-packages/nipype/algorithms/confounds.py:1182: FutureWarning: `rcond` parameter will change to the default of machine precision times ``max(M, N)`` where M and N are the input matrix dimensions. | |
To use the future default and silence this warning we advise to pass `rcond=None`, to keep using the old, explicitly pass `rcond=-1`. | |
betas = np.linalg.lstsq(X, data.T)[0] | |
/usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. | |
warnings.warn("No contour levels were found" | |
/usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. | |
warnings.warn("No contour levels were found" | |
/usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. | |
warnings.warn("No contour levels were found" | |
/usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. | |
warnings.warn("No contour levels were found" | |
/usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. | |
warnings.warn("No contour levels were found" | |
/usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. | |
warnings.warn("No contour levels were found" | |
/usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. | |
warnings.warn("No contour levels were found" | |
/usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. | |
warnings.warn("No contour levels were found" | |
/usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. | |
warnings.warn("No contour levels were found" | |
/usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. | |
warnings.warn("No contour levels were found" | |
/usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. | |
warnings.warn("No contour levels were found" | |
/usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. | |
warnings.warn("No contour levels were found" | |
/usr/local/miniconda/lib/python3.7/site-packages/scipy/fftpack/basic.py:160: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. | |
z[index] = x | |
/usr/local/miniconda/lib/python3.7/site-packages/scipy/fftpack/basic.py:160: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. | |
z[index] = x | |
/usr/local/miniconda/lib/python3.7/site-packages/nipype/algorithms/confounds.py:1182: FutureWarning: `rcond` parameter will change to the default of machine precision times ``max(M, N)`` where M and N are the input matrix dimensions. | |
To use the future default and silence this warning we advise to pass `rcond=None`, to keep using the old, explicitly pass `rcond=-1`. | |
betas = np.linalg.lstsq(X, data.T)[0] | |
/usr/local/miniconda/lib/python3.7/site-packages/nipype/algorithms/confounds.py:1182: FutureWarning: `rcond` parameter will change to the default of machine precision times ``max(M, N)`` where M and N are the input matrix dimensions. | |
To use the future default and silence this warning we advise to pass `rcond=None`, to keep using the old, explicitly pass `rcond=-1`. | |
betas = np.linalg.lstsq(X, data.T)[0] | |
/usr/local/miniconda/lib/python3.7/site-packages/scipy/fftpack/basic.py:160: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. | |
z[index] = x | |
/usr/local/miniconda/lib/python3.7/site-packages/scipy/fftpack/basic.py:160: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. | |
z[index] = x | |
/usr/local/miniconda/lib/python3.7/site-packages/nipype/algorithms/confounds.py:1182: FutureWarning: `rcond` parameter will change to the default of machine precision times ``max(M, N)`` where M and N are the input matrix dimensions. | |
To use the future default and silence this warning we advise to pass `rcond=None`, to keep using the old, explicitly pass `rcond=-1`. | |
betas = np.linalg.lstsq(X, data.T)[0] | |
/usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. | |
warnings.warn("No contour levels were found" | |
/usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. | |
warnings.warn("No contour levels were found" | |
/usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. | |
warnings.warn("No contour levels were found" | |
/usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. | |
warnings.warn("No contour levels were found" | |
/usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. | |
warnings.warn("No contour levels were found" | |
/usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range. | |
warnings.warn("No contour levels were found" | |
/usr/local/miniconda/lib/python3.7/site-packages/nipype/algorithms/confounds.py:1182: FutureWarning: `rcond` parameter will change to the default of machine precision times ``max(M, N)`` where M and N are the input matrix dimensions. | |
To use the future default and silence this warning we advise to pass `rcond=None`, to keep using the old, explicitly pass `rcond=-1`. | |
betas = np.linalg.lstsq(X, data.T)[0] | |
/usr/local/miniconda/lib/python3.7/site-packages/nipype/algorithms/confounds.py:1182: FutureWarning: `rcond` parameter will change to the default of machine precision times ``max(M, N)`` where M and N are the input matrix dimensions. | |
To use the future default and silence this warning we advise to pass `rcond=None`, to keep using the old, explicitly pass `rcond=-1`. | |
betas = np.linalg.lstsq(X, data.T)[0] | |
slurmstepd: Exceeded step memory limit at some point. |