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hw3/sbatch_mriqc.sh
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#!/bin/bash | |
# Add your SLURM options here | |
#SBATCH --cpus-per-task=8 # Number of cores to use | |
#SBATCH --mem=16gb # Memory limit | |
#SBATCH --time=02:00:00 # Time limit hh:mm:ss | |
#SBATCH -e error_%A_%a.log # Standard error | |
#SBATCH -o output_%A_%a.log # Standard output | |
#SBATCH --job-name=mriqc # Descriptive job name | |
#SBATCH --partition=serial # Use a serial partition 24 cores/7days | |
##### load required modules | |
module load singularity | |
# Add commands needed to run mriqc | |
singularity run --cleanenv \ | |
--bind /scratch/psyc5171/exercises/mbdata/bids:/data \ | |
--bind /scratch/amw17004/hw3/out:/out \ | |
/scratch/psyc5171/containers/mriqc_latest.sif \ | |
/data /out participant | |