From e8213da971116262164f4d658581918c1441c4d6 Mon Sep 17 00:00:00 2001
From: Pariksheet Nanda <pariksheet.nanda@uconn.edu>
Date: Mon, 14 Nov 2016 16:21:34 -0500
Subject: [PATCH] REL: 0.1

---
 DESCRIPTION                    |  15 +++++++++++++++
 NAMESPACE                      |   2 ++
 R/zzz.R                        |   7 +++++++
 data/graphInfo.rda             | Bin 0 -> 258 bytes
 man/Drosophila.melanogaster.Rd |  26 ++++++++++++++++++++++++++
 5 files changed, 50 insertions(+)
 create mode 100644 DESCRIPTION
 create mode 100644 NAMESPACE
 create mode 100644 R/zzz.R
 create mode 100644 data/graphInfo.rda
 create mode 100644 man/Drosophila.melanogaster.Rd

diff --git a/DESCRIPTION b/DESCRIPTION
new file mode 100644
index 0000000..0af2997
--- /dev/null
+++ b/DESCRIPTION
@@ -0,0 +1,15 @@
+Package: Drosophila.melanogaster
+Title: Annotation package for the Drosophila.melanogaster object
+Description: Contains the Drosophila.melanogaster object to access data from several related annotation packages.
+Version: 0.1
+Author: Pariksheet Nanda <pariksheet.nanda@uconn.edu>
+Maintainer: Pariksheet Nanda <pariksheet.nanda@uconn.edu>
+Depends: R (>= 1.6), AnnotationDbi (>= 1.17.11), methods, OrganismDbi
+        (>= 1.11.39), GenomicFeatures, GO.db, org.Dm.eg.db,
+        TxDb.Dmelanogaster.UCSC.dm6.ensGene
+Imports: GenomicFeatures, AnnotationDbi
+License: Artistic-2.0
+organism: Drosophila melanogaster
+species: Drosophila melanogaster
+biocViews: AnnotationData, Genetics, OrganismDb
+NeedsCompilation: no
diff --git a/NAMESPACE b/NAMESPACE
new file mode 100644
index 0000000..cd1c973
--- /dev/null
+++ b/NAMESPACE
@@ -0,0 +1,2 @@
+# A NAMESPACE is strictly required by R 2.14 or higher.
+import(OrganismDbi)
diff --git a/R/zzz.R b/R/zzz.R
new file mode 100644
index 0000000..ba63787
--- /dev/null
+++ b/R/zzz.R
@@ -0,0 +1,7 @@
+## .onLoad gets the data.frame from the /data directory
+.onLoad <- function(libname, pkgname) {
+    load(system.file("data", "graphInfo.rda", package = pkgname,
+                     lib.loc = libname))
+    OrganismDbi:::.loadOrganismDbiPkg(pkgname = pkgname,
+                                      graphInfo = graphInfo)
+}
diff --git a/data/graphInfo.rda b/data/graphInfo.rda
new file mode 100644
index 0000000000000000000000000000000000000000..6714a7315eaa6968d15704e17dc8b0e045b8f097
GIT binary patch
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zW6-4_Ri_0>zJMQos37axe=YiRtN+?y67$|nz4H5F@U6z}T%QOS+m~>MJOUiv0HI*d
I=o|t70G?)kBLDyZ

literal 0
HcmV?d00001

diff --git a/man/Drosophila.melanogaster.Rd b/man/Drosophila.melanogaster.Rd
new file mode 100644
index 0000000..81b07f6
--- /dev/null
+++ b/man/Drosophila.melanogaster.Rd
@@ -0,0 +1,26 @@
+\name{Drosophila.melanogaster}
+\docType{data}
+\alias{Drosophila.melanogaster}
+\title{Annotation package that collates several annotation resources.}
+\description{This data object
+  represents a collection of annotation packages that can be used as a
+  single object named Drosophila.melanogaster.  This object can be used with the
+  standard four accessor method for all AnnotationDbi objects.  Namely:
+  \code{cols}, \code{keytype}, \code{keys} and \code{select}.  Users are
+  encouraged to read the vignette from the \code{OrganismDbi} package for
+  more details.}
+\usage{library(Drosophila.melanogaster)}
+\keyword{datasets}
+\examples{
+  Drosophila.melanogaster
+  cls <- columns(Drosophila.melanogaster)
+  cls
+  cls <- cls[c(1,19,45)]
+  kts <- keytypes(Drosophila.melanogaster)
+  kt <- kts[2]
+  kts
+  ks <- head(keys(Drosophila.melanogaster, keytype=kts[2]))
+  ks
+  res <- select(Drosophila.melanogaster, keys=ks, columns=cls, keytype=kt)
+  head(res)
+}