DESCRIPTION

Package: runon
Title: Utilities for "Nuclear Run On" Biological Experiments
Version: 0.0.0.9000
Authors@R: person("Pariksheet", "Nanda", email = "pariksheet.nanda@uconn.edu",
	   	  role = c("aut", "cre"))
Description: Processes and analyzes raw nuclear run on data.  The first
    processing step is to estimate gene boundaries using an HMM.
Depends:
    R (>= 3.3.0)
License: GPL-3
Encoding: UTF-8
LazyData: true
Imports:
    groHMM (>= 1.7.0.9000),
    RMySQL (>= 0.10.9),
    rtracklayer (>= 1.32.1),
URL: https://github.uconn.edu/CoreLab/runon
BugReports: https://github.uconn.edu/CoreLab/runon/issues
biocViews: WholeGenome, Sequencing, Transcription, FunctionalGenomics, Software
RoxygenNote: 5.0.1
Suggests:
    knitr,
    rmarkdown,
    testthat
VignetteBuilder: knitr
Collate:
    'gene_boundaries.R'
    'io.R'
    'runon.R'
Remotes: omsai/groHMM@unittests