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hw7/sbatch_level1.sh
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| #!/bin/bash | |
| #SBATCH --mail-type=ALL | |
| #SBATCH --mail-user=oliver.mcneil@uconn.edu | |
| #SBATCH --nodes=1 | |
| #SBATCH --ntasks=1 | |
| #SBATCH --cpus-per-task=1 | |
| #SBATCH --mem=2gb | |
| #SBATCH --time=00:15:00 | |
| #SBATCH -e error_%A_%a.log | |
| #SBATCH -o output_%A_%a.log | |
| #SBATCH --job-name=level1 | |
| #SBATCH --partition=general | |
| participant=$1 | |
| run=$2 | |
| module load singularity | |
| singularity run --cleanenv \ | |
| --bind /scratch/ham19006/psyc5171_proj:/data \ | |
| /scratch/psyc5171/containers/nipype.sif \ | |
| /data/volume_scripts/level1_volume.py --fwhm 8 --hpfilter 120 --motion6 \ | |
| /data/bids \ | |
| /data/results/fmriprep \ | |
| /data/level1_results \ | |
| /data/contrasts.tsv \ | |
| $participant arithm $run | |