diff --git a/.code.js.swo b/.code.js.swo new file mode 100644 index 0000000..a7ae1ba Binary files /dev/null and b/.code.js.swo differ diff --git a/.code.js.swp b/.code.js.swp new file mode 100644 index 0000000..d09c1c0 Binary files /dev/null and b/.code.js.swp differ diff --git a/.idea/.name b/.idea/.name new file mode 100644 index 0000000..434f4b4 --- /dev/null +++ b/.idea/.name @@ -0,0 +1 @@ +cy_v1 \ No newline at end of file diff --git a/.idea/cy_v1.iml b/.idea/cy_v1.iml new file mode 100644 index 0000000..c956989 --- /dev/null +++ b/.idea/cy_v1.iml @@ -0,0 +1,8 @@ + + + + + + + + \ No newline at end of file diff --git a/.idea/inspectionProfiles/Project_Default.xml b/.idea/inspectionProfiles/Project_Default.xml new file mode 100644 index 0000000..99b1a92 --- /dev/null +++ b/.idea/inspectionProfiles/Project_Default.xml @@ -0,0 +1,11 @@ + + + + \ No newline at end of file diff --git a/.idea/inspectionProfiles/profiles_settings.xml b/.idea/inspectionProfiles/profiles_settings.xml new file mode 100644 index 0000000..3b31283 --- /dev/null +++ b/.idea/inspectionProfiles/profiles_settings.xml @@ -0,0 +1,7 @@ + + + + \ No newline at end of file diff --git a/.idea/misc.xml b/.idea/misc.xml new file mode 100644 index 0000000..19f74da --- /dev/null +++ b/.idea/misc.xml @@ -0,0 +1,14 @@ + + + + + + + + + + + + + + \ No newline at end of file diff --git a/.idea/modules.xml b/.idea/modules.xml new file mode 100644 index 0000000..3323ef2 --- /dev/null +++ b/.idea/modules.xml @@ -0,0 +1,8 @@ + + + + + + + + \ No newline at end of file diff --git a/.idea/vcs.xml b/.idea/vcs.xml new file mode 100644 index 0000000..6564d52 --- /dev/null +++ b/.idea/vcs.xml @@ -0,0 +1,6 @@ + + + + + + \ No newline at end of file diff --git a/.idea/workspace.xml b/.idea/workspace.xml new file mode 100644 index 0000000..34483ab --- /dev/null +++ b/.idea/workspace.xml @@ -0,0 +1,457 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + true + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + true + + + + + + + + + + + + 1440617170231 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + \ No newline at end of file diff --git a/code.js b/code.js new file mode 100644 index 0000000..631ca26 --- /dev/null +++ b/code.js @@ -0,0 +1,309 @@ +$(function () { // on dom ready + + function onChange(event) { + var reader = new FileReader(); + reader.onload = onReaderLoad; + reader.readAsText(event.target.files[0]); + } + + function onReaderLoad(event) { + console.log(event.target.result); + var obj = JSON.parse(event.target.result); + visual_pathway(obj); + } + + /* + function sendFileToServer(formData, status) { + var uploadURL = "http://localhost/pathway/cy_v1/index.php"; //Upload URL + var extraData = {}; //Extra Data. + var jqXHR = $.ajax({ + xhr: function () { + var xhrobj = $.ajaxSettings.xhr(); + if (xhrobj.upload) { + xhrobj.upload.addEventListener('progress', function (event) { + var percent = 0; + var position = event.loaded || event.position; + var total = event.total; + if (event.lengthComputable) { + percent = Math.ceil(position / total * 100); + } + //Set progress + status.setProgress(percent); + }, false); + } + return xhrobj; + }, + url: uploadURL, + type: "POST", + contentType: false, + processData: false, + cache: false, + data: formData, + success: function (data) { + status.setProgress(100); + $("#information").html(data); + $("#status1").append("File upload Done
"); + } + }); + + status.setAbort(jqXHR); + } + + var rowCount = 0; + + function createStatusbar(obj) { + rowCount++; + var row = "odd"; + if (rowCount % 2 == 0) row = "even"; + this.statusbar = $("
"); + this.filename = $("
").appendTo(this.statusbar); + this.size = $("
").appendTo(this.statusbar); + this.progressBar = $("
").appendTo(this.statusbar); + this.abort = $("
Abort
").appendTo(this.statusbar); + obj.after(this.statusbar); + + this.setFileNameSize = function (name, size) { + var sizeStr = ""; + var sizeKB = size / 1024; + if (parseInt(sizeKB) > 1024) { + var sizeMB = sizeKB / 1024; + sizeStr = sizeMB.toFixed(2) + " MB"; + } + else { + sizeStr = sizeKB.toFixed(2) + " KB"; + } + + this.filename.html(name); + this.size.html(sizeStr); + } + this.setProgress = function (progress) { + var progressBarWidth = progress * this.progressBar.width() / 100; + this.progressBar.find('div').animate({width: progressBarWidth}, 10).html(progress + "% "); + if (parseInt(progress) >= 100) { + this.abort.hide(); + } + } + this.setAbort = function (jqxhr) { + var sb = this.statusbar; + this.abort.click(function () { + jqxhr.abort(); + sb.hide(); + }); + } + } + + function handleFileUpload(files, obj) { + for (var i = 0; i < files.length; i++) { + var fd = new FormData(); + fd.append('file', files[i]); + + var status = new createStatusbar(obj); //Using this we can set progress. + status.setFileNameSize(files[i].name, files[i].size); + sendFileToServer(fd, status); + + } + } + + var obj = $("#dragandrophandler"); + obj.on('dragenter', function (e) { + e.stopPropagation(); + e.preventDefault(); + $(this).css('border', '2px solid #0B85A1'); + }); + obj.on('dragover', function (e) { + e.stopPropagation(); + e.preventDefault(); + }); + obj.on('drop', function (e) { + + $(this).css('border', '2px dotted #0B85A1'); + e.preventDefault(); + var files = e.originalEvent.dataTransfer.files; + + //We need to send dropped files to Server + handleFileUpload(files, obj); + }); + $(document).on('dragenter', function (e) { + e.stopPropagation(); + e.preventDefault(); + }); + $(document).on('dragover', function (e) { + e.stopPropagation(); + e.preventDefault(); + obj.css('border', '2px dotted #0B85A1'); + }); + $(document).on('drop', function (e) { + e.stopPropagation(); + e.preventDefault(); + }); + + function addCircle(nodeId, circleText) { + console.log(nodeId, circleText); + var parentNode = cy.$('#' + nodeId); + if (parentNode.data('isCircle') || parentNode.data('circleId')) + return; + parentNode.lock(); + var px = parentNode.position('x') + 10; + var py = parentNode.position('y') - 10; + var circleId = (cy.nodes().size() + 1).toString(); + parentNode.data('circleId', circleId); + cy.add({ + group: 'nodes', + data: {weight: 75, id: circleId, name: circleText, isCircle: true}, + position: {x: px, y: py}, + locked: true + }).css({ + 'background-color': 'yellow', + 'shape': 'ellipse', + 'background-opacity': 0.5 + }).unselectify(); + } + */ + + + //dCircle('1', 'Bubble A'); + + function visual_pathway(obj) { + $('#cy').cytoscape({ + style: cytoscape.stylesheet() + .selector('node').css({ + 'content': 'data(name)', + 'text-valign': 'center', + 'color': 'black', + 'padding-left': 2, + 'padding-right': 2, + 'font-family': 'data(LabelSize)', + 'background-color': 'white' + }) + .selector('node[Type="GeneProduct"]').css({ + 'shape': 'rectangle', + 'width': 'data(Width)', + 'height': 'data(Height)', + 'text-valign': 'middle', + 'background-color': 'white', + 'border-color': 'black', + 'border-width': 1 + }) + .selector('node[Type="Protein"]').css({ + 'shape': 'rectangle', + 'width': 'data(Width)', + 'height': 'data(Height)', + 'background-color': 'white', + 'color': '#ff3333', + 'border-color': '#ff3333', + 'border-style': 'solid', + 'border-width': 1 + }) + .selector('node[Shape="Brace"]').css({ + 'shape': 'rectangle', + 'width': '1', + 'height': 'data(Width)', + 'background-color': 'black', + 'color': 'black', + 'border-color': 'black', + 'border-style': 'solid', + 'border-width': 1 + }) + .selector('node[FillColor="ffffff"]').css({ + 'background-color': 'white', + 'color': 'blue', + 'text-halign': 'center', + 'text-valign': 'top' + }) + .selector('edge').css({ + 'line-color': 'black', + 'line-style': 'solid', + 'width': 1 + }) + .selector('edge[LineStyle="Dashed"]').css({ + 'line-style': 'dashed', + 'line-color': 'black', + 'background-color': 'black', + 'color': 'black' + }) + .selector('edge[EndArrow="Arrow"]').css({ + 'target-arrow-shape': 'triangle', + 'target-arrow-color': 'black', + 'target-arrow-fill': 'filled' + }) + .selector('edge[EndArrow="TBar"]').css({ + 'target-arrow-shape': 'tee', + 'target-arrow-color': 'black', + 'target-arrow-fill': 'filled' + }) + .selector('edge[ConnectorType="Elbow"]').css({ + 'line-color': 'yellow', + 'line-style': 'solid' + }) + .selector('edge:selected').css({ + 'background-color': 'black', + 'line-color': 'black', + 'target-arrow-color': 'black', + 'source-arrow-color': 'black' + }) + .selector('node:selected').css({ + 'width': 10 + }) + .selector('.faded').css({ + 'opacity': 1, + 'text-opacity': 0 + }) + .selector('.green').css({ + 'background-color': 'green', + 'color': 'black' + }) + .selector('.red').css({ + 'background-color': 'red', + 'color': 'white' + }), + + elements: obj.elements, + + layout: { + name: 'preset', + padding: 10 + }, + //style: { + // name: 'WikiPathways' + //}, + + // on graph initial layout done (could be async depending on layout...) + + + ready: function () { + window.cy = this; + + cy.elements().unselectify(); + + var selectedNodes = []; + var counts = {}; + var str_info; + + //$('#information').append("You have selected:" + "
"); + + cy.off('click', 'node').on('click', 'node', function (e) { + e.preventDefault(); + + var node = this; + + var node_name = node.data("shared_name"); + var node_id = node.data("id"); + //console.log(node_name); + + if ($.inArray(node_name, selectedNodes) !== -1) { + node.addClass('red'); + var old_html = $('#params').text; + console.log(old_html); + $('#params').append(node_name + ":" + "high" + "\n"); + } else { + selectedNodes.push(node_name); + node.addClass('green'); + $('#params').append(node_name + ":" + "low" + "\n"); + } + }); + } + }); + } + + document.getElementById('file').addEventListener('change', onChange); +}); // on dom ready diff --git a/code.js~ b/code.js~ new file mode 100644 index 0000000..f9eba4f --- /dev/null +++ b/code.js~ @@ -0,0 +1,79 @@ +$(function(){ // on dom ready + +$('#cy').cytoscape({ + style: cytoscape.stylesheet() + .selector('node').css({ + 'content': 'data(name)', + 'text-valign': 'center', + 'color': 'black', + 'text-outline-color': '#000' + }) + .selector('edge').css({ + 'target-arrow-shape': 'triangle' + }) + .selector(':selected').css({ + 'background-color': 'black', + 'line-color': 'black', + 'target-arrow-color': 'black', + 'source-arrow-color': 'black' + }) + .selector('.faded').css({ + 'opacity': 1, + 'text-opacity': 0 + }) + .selector('.green').css({ + 'color': 'green' + }) + .selector('.red').css({ + 'color': 'red' + }), + + elements: { + nodes: [ + { data: { id: 'p53', name: 'p53' } }, + { data: { id: 'MDM2', name: 'MDM2' } }, + { data: { id: 'p14ARF', name: 'p14/ARF' } }, + { data: { id: 'p21', name: 'p21' } }, + { data: { id: 'Rb', name: 'Rb' } }, + { data: { id: 'E2F', name: 'E2F' } }, + { data: { id: 'CDK2', name: 'CDK2' } }, + { data: { id: 'CKS1', name: 'CKS1' } }, + { data: { id: 'Skp2', name: 'Skp2' } } + ], + edges: [ + { data: { source: 'p53', target: 'p21' } }, + { data: { source: 'MDM2', target: 'p53' } }, + { data: { source: 'p14ARF', target: 'MDM2' } }, + { data: { source: 'Rb', target: 'E2F' } }, + { data: { source: 'CDK2', target: 'Rb' } }, + { data: { source: 'CKS1', target: 'Skp2' } } + ] + }, + + + layout: { + name: 'grid', + padding: 10 + }, + + // on graph initial layout done (could be async depending on layout...) + ready: function(){ + + window.cy = this; + + // giddy up... + + cy.elements().unselectify(); + + cy.on('tap', 'node', function(e){ + e.preventDefault(); + + var node = this; + console.log(node.position()); + $('#information').append(node.id() + ', '); + node.addClass('green'); + }); + } +}); + +}); // on dom ready diff --git a/database.png b/database.png new file mode 100644 index 0000000..2f883a9 Binary files /dev/null and b/database.png differ diff --git a/get.php b/get.php new file mode 100644 index 0000000..b7cb468 --- /dev/null +++ b/get.php @@ -0,0 +1,10 @@ +'; print_r($params); echo ''; \ No newline at end of file diff --git a/html2canvas.js b/html2canvas.js new file mode 100644 index 0000000..c83e0e4 --- /dev/null +++ b/html2canvas.js @@ -0,0 +1,3667 @@ +/* + html2canvas 0.5.0-alpha1 + Copyright (c) 2015 Niklas von Hertzen + + Released under MIT License + */ + +(function (window, document, exports, global, define, undefined) { + + /*! + * @overview es6-promise - a tiny implementation of Promises/A+. + * @copyright Copyright (c) 2014 Yehuda Katz, Tom Dale, Stefan Penner and contributors (Conversion to ES6 API by Jake Archibald) + * @license Licensed under MIT license + * See https://raw.githubusercontent.com/jakearchibald/es6-promise/master/LICENSE + * @version 2.0.1 + */ + + (function () { + function r(a, b) { + n[l] = a; + n[l + 1] = b; + l += 2; + 2 === l && A() + } + + function s(a) { + return "function" === typeof a + } + + function F() { + return function () { + process.nextTick(t) + } + } + + function G() { + var a = 0, b = new B(t), c = document.createTextNode(""); + b.observe(c, {characterData: !0}); + return function () { + c.data = a = ++a % 2 + } + } + + function H() { + var a = new MessageChannel; + a.port1.onmessage = t; + return function () { + a.port2.postMessage(0) + } + } + + function I() { + return function () { + setTimeout(t, 1) + } + } + + function t() { + for (var a = 0; a < l; a += 2)(0, n[a])(n[a + 1]), n[a] = void 0, n[a + 1] = void 0; + l = 0 + } + + function p() { + } + + function J(a, b, c, d) { + try { + a.call(b, c, d) + } catch (e) { + return e + } + } + + function K(a, b, c) { + r(function (a) { + var e = !1, f = J(c, b, function (c) { + e || (e = !0, b !== c ? q(a, c) : m(a, c)) + }, function (b) { + e || (e = !0, g(a, b)) + }); + !e && f && (e = !0, g(a, f)) + }, a) + } + + function L(a, b) { + 1 === b.a ? m(a, b.b) : 2 === a.a ? g(a, b.b) : u(b, void 0, function (b) { + q(a, b) + }, function (b) { + g(a, b) + }) + } + + function q(a, b) { + if (a === b)g(a, new TypeError("You cannot resolve a promise with itself")); else if ("function" === typeof b || "object" === typeof b && null !== b)if (b.constructor === a.constructor)L(a, + b); else { + var c; + try { + c = b.then + } catch (d) { + v.error = d, c = v + } + c === v ? g(a, v.error) : void 0 === c ? m(a, b) : s(c) ? K(a, b, c) : m(a, b) + } else m(a, b) + } + + function M(a) { + a.f && a.f(a.b); + x(a) + } + + function m(a, b) { + void 0 === a.a && (a.b = b, a.a = 1, 0 !== a.e.length && r(x, a)) + } + + function g(a, b) { + void 0 === a.a && (a.a = 2, a.b = b, r(M, a)) + } + + function u(a, b, c, d) { + var e = a.e, f = e.length; + a.f = null; + e[f] = b; + e[f + 1] = c; + e[f + 2] = d; + 0 === f && a.a && r(x, a) + } + + function x(a) { + var b = a.e, c = a.a; + if (0 !== b.length) { + for (var d, e, f = a.b, g = 0; g < b.length; g += 3)d = b[g], e = b[g + c], d ? C(c, d, e, f) : e(f); + a.e.length = 0 + } + } + + function D() { + this.error = + null + } + + function C(a, b, c, d) { + var e = s(c), f, k, h, l; + if (e) { + try { + f = c(d) + } catch (n) { + y.error = n, f = y + } + f === y ? (l = !0, k = f.error, f = null) : h = !0; + if (b === f) { + g(b, new TypeError("A promises callback cannot return that same promise.")); + return + } + } else f = d, h = !0; + void 0 === b.a && (e && h ? q(b, f) : l ? g(b, k) : 1 === a ? m(b, f) : 2 === a && g(b, f)) + } + + function N(a, b) { + try { + b(function (b) { + q(a, b) + }, function (b) { + g(a, b) + }) + } catch (c) { + g(a, c) + } + } + + function k(a, b, c, d) { + this.n = a; + this.c = new a(p, d); + this.i = c; + this.o(b) ? (this.m = b, this.d = this.length = b.length, this.l(), 0 === this.length ? m(this.c, + this.b) : (this.length = this.length || 0, this.k(), 0 === this.d && m(this.c, this.b))) : g(this.c, this.p()) + } + + function h(a) { + O++; + this.b = this.a = void 0; + this.e = []; + if (p !== a) { + if (!s(a))throw new TypeError("You must pass a resolver function as the first argument to the promise constructor"); + if (!(this instanceof h))throw new TypeError("Failed to construct 'Promise': Please use the 'new' operator, this object constructor cannot be called as a function."); + N(this, a) + } + } + + var E = Array.isArray ? Array.isArray : function (a) { + return "[object Array]" === + Object.prototype.toString.call(a) + }, l = 0, w = "undefined" !== typeof window ? window : {}, B = w.MutationObserver || w.WebKitMutationObserver, w = "undefined" !== typeof Uint8ClampedArray && "undefined" !== typeof importScripts && "undefined" !== typeof MessageChannel, n = Array(1E3), A; + A = "undefined" !== typeof process && "[object process]" === {}.toString.call(process) ? F() : B ? G() : w ? H() : I(); + var v = new D, y = new D; + k.prototype.o = function (a) { + return E(a) + }; + k.prototype.p = function () { + return Error("Array Methods must be provided an Array") + }; + k.prototype.l = + function () { + this.b = Array(this.length) + }; + k.prototype.k = function () { + for (var a = this.length, b = this.c, c = this.m, d = 0; void 0 === b.a && d < a; d++)this.j(c[d], d) + }; + k.prototype.j = function (a, b) { + var c = this.n; + "object" === typeof a && null !== a ? a.constructor === c && void 0 !== a.a ? (a.f = null, this.g(a.a, b, a.b)) : this.q(c.resolve(a), b) : (this.d--, this.b[b] = this.h(a)) + }; + k.prototype.g = function (a, b, c) { + var d = this.c; + void 0 === d.a && (this.d--, this.i && 2 === a ? g(d, c) : this.b[b] = this.h(c)); + 0 === this.d && m(d, this.b) + }; + k.prototype.h = function (a) { + return a + }; + k.prototype.q = function (a, b) { + var c = this; + u(a, void 0, function (a) { + c.g(1, b, a) + }, function (a) { + c.g(2, b, a) + }) + }; + var O = 0; + h.all = function (a, b) { + return (new k(this, a, !0, b)).c + }; + h.race = function (a, b) { + function c(a) { + q(e, a) + } + + function d(a) { + g(e, a) + } + + var e = new this(p, b); + if (!E(a))return (g(e, new TypeError("You must pass an array to race.")), e); + for (var f = a.length, h = 0; void 0 === e.a && h < f; h++)u(this.resolve(a[h]), void 0, c, d); + return e + }; + h.resolve = function (a, b) { + if (a && "object" === typeof a && a.constructor === this)return a; + var c = new this(p, b); + q(c, a); + return c + }; + h.reject = function (a, b) { + var c = new this(p, b); + g(c, a); + return c + }; + h.prototype = { + constructor: h, then: function (a, b) { + var c = this.a; + if (1 === c && !a || 2 === c && !b)return this; + var d = new this.constructor(p), e = this.b; + if (c) { + var f = arguments[c - 1]; + r(function () { + C(c, d, f, e) + }) + } else u(this, d, a, b); + return d + }, "catch": function (a) { + return this.then(null, a) + } + }; + var z = { + Promise: h, polyfill: function () { + var a; + a = "undefined" !== typeof global ? global : "undefined" !== typeof window && window.document ? window : self; + "Promise"in a && "resolve"in + a.Promise && "reject"in a.Promise && "all"in a.Promise && "race"in a.Promise && function () { + var b; + new a.Promise(function (a) { + b = a + }); + return s(b) + }() || (a.Promise = h) + } + }; + "function" === typeof define && define.amd ? define(function () { + return z + }) : "undefined" !== typeof module && module.exports ? module.exports = z : "undefined" !== typeof this && (this.ES6Promise = z); + }).call(window); + if (window) { + window.ES6Promise.polyfill(); + } + + + if (typeof(document) === "undefined" || typeof(Object.create) !== "function" || typeof(document.createElement("canvas").getContext) !== "function") { + (window || module.exports).html2canvas = function () { + return Promise.reject("No canvas support"); + }; + return; + } + + /*! https://mths.be/punycode v1.3.1 by @mathias */ + ; + (function (root) { + + /** Detect free variables */ + var freeExports = typeof exports == 'object' && exports && !exports.nodeType && exports; + var freeModule = typeof module == 'object' && module && !module.nodeType && module; + var freeGlobal = typeof global == 'object' && global; + if ( + freeGlobal.global === freeGlobal || + freeGlobal.window === freeGlobal || + freeGlobal.self === freeGlobal + ) { + root = freeGlobal; + } + + /** + * The `punycode` object. + * @name punycode + * @type Object + */ + var punycode, + + /** Highest positive signed 32-bit float value */ + maxInt = 2147483647, // aka. 0x7FFFFFFF or 2^31-1 + + /** Bootstring parameters */ + base = 36, + tMin = 1, + tMax = 26, + skew = 38, + damp = 700, + initialBias = 72, + initialN = 128, // 0x80 + delimiter = '-', // '\x2D' + + /** Regular expressions */ + regexPunycode = /^xn--/, + regexNonASCII = /[^\x20-\x7E]/, // unprintable ASCII chars + non-ASCII chars + regexSeparators = /[\x2E\u3002\uFF0E\uFF61]/g, // RFC 3490 separators + + /** Error messages */ + errors = { + 'overflow': 'Overflow: input needs wider integers to process', + 'not-basic': 'Illegal input >= 0x80 (not a basic code point)', + 'invalid-input': 'Invalid input' + }, + + /** Convenience shortcuts */ + baseMinusTMin = base - tMin, + floor = Math.floor, + stringFromCharCode = String.fromCharCode, + + /** Temporary variable */ + key; + + /*--------------------------------------------------------------------------*/ + + /** + * A generic error utility function. + * @private + * @param {String} type The error type. + * @returns {Error} Throws a `RangeError` with the applicable error message. + */ + function error(type) { + throw RangeError(errors[type]); + } + + /** + * A generic `Array#map` utility function. + * @private + * @param {Array} array The array to iterate over. + * @param {Function} callback The function that gets called for every array + * item. + * @returns {Array} A new array of values returned by the callback function. + */ + function map(array, fn) { + var length = array.length; + var result = []; + while (length--) { + result[length] = fn(array[length]); + } + return result; + } + + /** + * A simple `Array#map`-like wrapper to work with domain name strings or email + * addresses. + * @private + * @param {String} domain The domain name or email address. + * @param {Function} callback The function that gets called for every + * character. + * @returns {Array} A new string of characters returned by the callback + * function. + */ + function mapDomain(string, fn) { + var parts = string.split('@'); + var result = ''; + if (parts.length > 1) { + // In email addresses, only the domain name should be punycoded. Leave + // the local part (i.e. everything up to `@`) intact. + result = parts[0] + '@'; + string = parts[1]; + } + var labels = string.split(regexSeparators); + var encoded = map(labels, fn).join('.'); + return result + encoded; + } + + /** + * Creates an array containing the numeric code points of each Unicode + * character in the string. While JavaScript uses UCS-2 internally, + * this function will convert a pair of surrogate halves (each of which + * UCS-2 exposes as separate characters) into a single code point, + * matching UTF-16. + * @see `punycode.ucs2.encode` + * @see + * @memberOf punycode.ucs2 + * @name decode + * @param {String} string The Unicode input string (UCS-2). + * @returns {Array} The new array of code points. + */ + function ucs2decode(string) { + var output = [], + counter = 0, + length = string.length, + value, + extra; + while (counter < length) { + value = string.charCodeAt(counter++); + if (value >= 0xD800 && value <= 0xDBFF && counter < length) { + // high surrogate, and there is a next character + extra = string.charCodeAt(counter++); + if ((extra & 0xFC00) == 0xDC00) { // low surrogate + output.push(((value & 0x3FF) << 10) + (extra & 0x3FF) + 0x10000); + } else { + // unmatched surrogate; only append this code unit, in case the next + // code unit is the high surrogate of a surrogate pair + output.push(value); + counter--; + } + } else { + output.push(value); + } + } + return output; + } + + /** + * Creates a string based on an array of numeric code points. + * @see `punycode.ucs2.decode` + * @memberOf punycode.ucs2 + * @name encode + * @param {Array} codePoints The array of numeric code points. + * @returns {String} The new Unicode string (UCS-2). + */ + function ucs2encode(array) { + return map(array, function (value) { + var output = ''; + if (value > 0xFFFF) { + value -= 0x10000; + output += stringFromCharCode(value >>> 10 & 0x3FF | 0xD800); + value = 0xDC00 | value & 0x3FF; + } + output += stringFromCharCode(value); + return output; + }).join(''); + } + + /** + * Converts a basic code point into a digit/integer. + * @see `digitToBasic()` + * @private + * @param {Number} codePoint The basic numeric code point value. + * @returns {Number} The numeric value of a basic code point (for use in + * representing integers) in the range `0` to `base - 1`, or `base` if + * the code point does not represent a value. + */ + function basicToDigit(codePoint) { + if (codePoint - 48 < 10) { + return codePoint - 22; + } + if (codePoint - 65 < 26) { + return codePoint - 65; + } + if (codePoint - 97 < 26) { + return codePoint - 97; + } + return base; + } + + /** + * Converts a digit/integer into a basic code point. + * @see `basicToDigit()` + * @private + * @param {Number} digit The numeric value of a basic code point. + * @returns {Number} The basic code point whose value (when used for + * representing integers) is `digit`, which needs to be in the range + * `0` to `base - 1`. If `flag` is non-zero, the uppercase form is + * used; else, the lowercase form is used. The behavior is undefined + * if `flag` is non-zero and `digit` has no uppercase form. + */ + function digitToBasic(digit, flag) { + // 0..25 map to ASCII a..z or A..Z + // 26..35 map to ASCII 0..9 + return digit + 22 + 75 * (digit < 26) - ((flag != 0) << 5); + } + + /** + * Bias adaptation function as per section 3.4 of RFC 3492. + * http://tools.ietf.org/html/rfc3492#section-3.4 + * @private + */ + function adapt(delta, numPoints, firstTime) { + var k = 0; + delta = firstTime ? floor(delta / damp) : delta >> 1; + delta += floor(delta / numPoints); + for (/* no initialization */; delta > baseMinusTMin * tMax >> 1; k += base) { + delta = floor(delta / baseMinusTMin); + } + return floor(k + (baseMinusTMin + 1) * delta / (delta + skew)); + } + + /** + * Converts a Punycode string of ASCII-only symbols to a string of Unicode + * symbols. + * @memberOf punycode + * @param {String} input The Punycode string of ASCII-only symbols. + * @returns {String} The resulting string of Unicode symbols. + */ + function decode(input) { + // Don't use UCS-2 + var output = [], + inputLength = input.length, + out, + i = 0, + n = initialN, + bias = initialBias, + basic, + j, + index, + oldi, + w, + k, + digit, + t, + /** Cached calculation results */ + baseMinusT; + + // Handle the basic code points: let `basic` be the number of input code + // points before the last delimiter, or `0` if there is none, then copy + // the first basic code points to the output. + + basic = input.lastIndexOf(delimiter); + if (basic < 0) { + basic = 0; + } + + for (j = 0; j < basic; ++j) { + // if it's not a basic code point + if (input.charCodeAt(j) >= 0x80) { + error('not-basic'); + } + output.push(input.charCodeAt(j)); + } + + // Main decoding loop: start just after the last delimiter if any basic code + // points were copied; start at the beginning otherwise. + + for (index = basic > 0 ? basic + 1 : 0; index < inputLength; /* no final expression */) { + + // `index` is the index of the next character to be consumed. + // Decode a generalized variable-length integer into `delta`, + // which gets added to `i`. The overflow checking is easier + // if we increase `i` as we go, then subtract off its starting + // value at the end to obtain `delta`. + for (oldi = i, w = 1, k = base; /* no condition */; k += base) { + + if (index >= inputLength) { + error('invalid-input'); + } + + digit = basicToDigit(input.charCodeAt(index++)); + + if (digit >= base || digit > floor((maxInt - i) / w)) { + error('overflow'); + } + + i += digit * w; + t = k <= bias ? tMin : (k >= bias + tMax ? tMax : k - bias); + + if (digit < t) { + break; + } + + baseMinusT = base - t; + if (w > floor(maxInt / baseMinusT)) { + error('overflow'); + } + + w *= baseMinusT; + + } + + out = output.length + 1; + bias = adapt(i - oldi, out, oldi == 0); + + // `i` was supposed to wrap around from `out` to `0`, + // incrementing `n` each time, so we'll fix that now: + if (floor(i / out) > maxInt - n) { + error('overflow'); + } + + n += floor(i / out); + i %= out; + + // Insert `n` at position `i` of the output + output.splice(i++, 0, n); + + } + + return ucs2encode(output); + } + + /** + * Converts a string of Unicode symbols (e.g. a domain name label) to a + * Punycode string of ASCII-only symbols. + * @memberOf punycode + * @param {String} input The string of Unicode symbols. + * @returns {String} The resulting Punycode string of ASCII-only symbols. + */ + function encode(input) { + var n, + delta, + handledCPCount, + basicLength, + bias, + j, + m, + q, + k, + t, + currentValue, + output = [], + /** `inputLength` will hold the number of code points in `input`. */ + inputLength, + /** Cached calculation results */ + handledCPCountPlusOne, + baseMinusT, + qMinusT; + + // Convert the input in UCS-2 to Unicode + input = ucs2decode(input); + + // Cache the length + inputLength = input.length; + + // Initialize the state + n = initialN; + delta = 0; + bias = initialBias; + + // Handle the basic code points + for (j = 0; j < inputLength; ++j) { + currentValue = input[j]; + if (currentValue < 0x80) { + output.push(stringFromCharCode(currentValue)); + } + } + + handledCPCount = basicLength = output.length; + + // `handledCPCount` is the number of code points that have been handled; + // `basicLength` is the number of basic code points. + + // Finish the basic string - if it is not empty - with a delimiter + if (basicLength) { + output.push(delimiter); + } + + // Main encoding loop: + while (handledCPCount < inputLength) { + + // All non-basic code points < n have been handled already. Find the next + // larger one: + for (m = maxInt, j = 0; j < inputLength; ++j) { + currentValue = input[j]; + if (currentValue >= n && currentValue < m) { + m = currentValue; + } + } + + // Increase `delta` enough to advance the decoder's state to , + // but guard against overflow + handledCPCountPlusOne = handledCPCount + 1; + if (m - n > floor((maxInt - delta) / handledCPCountPlusOne)) { + error('overflow'); + } + + delta += (m - n) * handledCPCountPlusOne; + n = m; + + for (j = 0; j < inputLength; ++j) { + currentValue = input[j]; + + if (currentValue < n && ++delta > maxInt) { + error('overflow'); + } + + if (currentValue == n) { + // Represent delta as a generalized variable-length integer + for (q = delta, k = base; /* no condition */; k += base) { + t = k <= bias ? tMin : (k >= bias + tMax ? tMax : k - bias); + if (q < t) { + break; + } + qMinusT = q - t; + baseMinusT = base - t; + output.push( + stringFromCharCode(digitToBasic(t + qMinusT % baseMinusT, 0)) + ); + q = floor(qMinusT / baseMinusT); + } + + output.push(stringFromCharCode(digitToBasic(q, 0))); + bias = adapt(delta, handledCPCountPlusOne, handledCPCount == basicLength); + delta = 0; + ++handledCPCount; + } + } + + ++delta; + ++n; + + } + return output.join(''); + } + + /** + * Converts a Punycode string representing a domain name or an email address + * to Unicode. Only the Punycoded parts of the input will be converted, i.e. + * it doesn't matter if you call it on a string that has already been + * converted to Unicode. + * @memberOf punycode + * @param {String} input The Punycoded domain name or email address to + * convert to Unicode. + * @returns {String} The Unicode representation of the given Punycode + * string. + */ + function toUnicode(input) { + return mapDomain(input, function (string) { + return regexPunycode.test(string) + ? decode(string.slice(4).toLowerCase()) + : string; + }); + } + + /** + * Converts a Unicode string representing a domain name or an email address to + * Punycode. Only the non-ASCII parts of the domain name will be converted, + * i.e. it doesn't matter if you call it with a domain that's already in + * ASCII. + * @memberOf punycode + * @param {String} input The domain name or email address to convert, as a + * Unicode string. + * @returns {String} The Punycode representation of the given domain name or + * email address. + */ + function toASCII(input) { + return mapDomain(input, function (string) { + return regexNonASCII.test(string) + ? 'xn--' + encode(string) + : string; + }); + } + + /*--------------------------------------------------------------------------*/ + + /** Define the public API */ + punycode = { + /** + * A string representing the current Punycode.js version number. + * @memberOf punycode + * @type String + */ + 'version': '1.3.1', + /** + * An object of methods to convert from JavaScript's internal character + * representation (UCS-2) to Unicode code points, and back. + * @see + * @memberOf punycode + * @type Object + */ + 'ucs2': { + 'decode': ucs2decode, + 'encode': ucs2encode + }, + 'decode': decode, + 'encode': encode, + 'toASCII': toASCII, + 'toUnicode': toUnicode + }; + + /** Expose `punycode` */ + // Some AMD build optimizers, like r.js, check for specific condition patterns + // like the following: + if ( + typeof define == 'function' && + typeof define.amd == 'object' && + define.amd + ) { + define('punycode', function () { + return punycode; + }); + } else if (freeExports && freeModule) { + if (module.exports == freeExports) { // in Node.js or RingoJS v0.8.0+ + freeModule.exports = punycode; + } else { // in Narwhal or RingoJS v0.7.0- + for (key in punycode) { + punycode.hasOwnProperty(key) && (freeExports[key] = punycode[key]); + } + } + } else { // in Rhino or a web browser + root.punycode = punycode; + } + + }(this)); + + var html2canvasNodeAttribute = "data-html2canvas-node"; + var html2canvasCanvasCloneAttribute = "data-html2canvas-canvas-clone"; + var html2canvasCanvasCloneIndex = 0; + var html2canvasCloneIndex = 0; + + window.html2canvas = function (nodeList, options) { + var index = html2canvasCloneIndex++; + options = options || {}; + if (options.logging) { + window.html2canvas.logging = true; + window.html2canvas.start = Date.now(); + } + + options.async = typeof(options.async) === "undefined" ? true : options.async; + options.allowTaint = typeof(options.allowTaint) === "undefined" ? false : options.allowTaint; + options.removeContainer = typeof(options.removeContainer) === "undefined" ? true : options.removeContainer; + options.javascriptEnabled = typeof(options.javascriptEnabled) === "undefined" ? false : options.javascriptEnabled; + options.imageTimeout = typeof(options.imageTimeout) === "undefined" ? 10000 : options.imageTimeout; + options.renderer = typeof(options.renderer) === "function" ? options.renderer : CanvasRenderer; + options.strict = !!options.strict; + + if (typeof(nodeList) === "string") { + if (typeof(options.proxy) !== "string") { + return Promise.reject("Proxy must be used when rendering url"); + } + var width = options.width != null ? options.width : window.innerWidth; + var height = options.height != null ? options.height : window.innerHeight; + return loadUrlDocument(absoluteUrl(nodeList), options.proxy, document, width, height, options).then(function (container) { + return renderWindow(container.contentWindow.document.documentElement, container, options, width, height); + }); + } + + var node = ((nodeList === undefined) ? [document.documentElement] : ((nodeList.length) ? nodeList : [nodeList]))[0]; + node.setAttribute(html2canvasNodeAttribute + index, index); + return renderDocument(node.ownerDocument, options, node.ownerDocument.defaultView.innerWidth, node.ownerDocument.defaultView.innerHeight, index).then(function (canvas) { + if (typeof(options.onrendered) === "function") { + log("options.onrendered is deprecated, html2canvas returns a Promise containing the canvas"); + options.onrendered(canvas); + } + return canvas; + }); + }; + + window.html2canvas.punycode = this.punycode; + window.html2canvas.proxy = {}; + + function renderDocument(document, options, windowWidth, windowHeight, html2canvasIndex) { + return createWindowClone(document, document, windowWidth, windowHeight, options, document.defaultView.pageXOffset, document.defaultView.pageYOffset).then(function (container) { + log("Document cloned"); + var attributeName = html2canvasNodeAttribute + html2canvasIndex; + var selector = "[" + attributeName + "='" + html2canvasIndex + "']"; + document.querySelector(selector).removeAttribute(attributeName); + var clonedWindow = container.contentWindow; + var node = clonedWindow.document.querySelector(selector); + var oncloneHandler = (typeof(options.onclone) === "function") ? Promise.resolve(options.onclone(clonedWindow.document)) : Promise.resolve(true); + return oncloneHandler.then(function () { + return renderWindow(node, container, options, windowWidth, windowHeight); + }); + }); + } + + function renderWindow(node, container, options, windowWidth, windowHeight) { + var clonedWindow = container.contentWindow; + var support = new Support(clonedWindow.document); + var imageLoader = new ImageLoader(options, support); + var bounds = getBounds(node); + var width = options.type === "view" ? windowWidth : documentWidth(clonedWindow.document); + var height = options.type === "view" ? windowHeight : documentHeight(clonedWindow.document); + var renderer = new options.renderer(width, height, imageLoader, options, document); + var parser = new NodeParser(node, renderer, support, imageLoader, options); + return parser.ready.then(function () { + log("Finished rendering"); + var canvas; + + if (options.type === "view") { + canvas = crop(renderer.canvas, { + width: renderer.canvas.width, + height: renderer.canvas.height, + top: 0, + left: 0, + x: 0, + y: 0 + }); + } else if (node === clonedWindow.document.body || node === clonedWindow.document.documentElement || options.canvas != null) { + canvas = renderer.canvas; + } else { + canvas = crop(renderer.canvas, { + width: options.width != null ? options.width : bounds.width, + height: options.height != null ? options.height : bounds.height, + top: bounds.top, + left: bounds.left, + x: clonedWindow.pageXOffset, + y: clonedWindow.pageYOffset + }); + } + + cleanupContainer(container, options); + return canvas; + }); + } + + function cleanupContainer(container, options) { + if (options.removeContainer) { + container.parentNode.removeChild(container); + log("Cleaned up container"); + } + } + + function crop(canvas, bounds) { + var croppedCanvas = document.createElement("canvas"); + var x1 = Math.min(canvas.width - 1, Math.max(0, bounds.left)); + var x2 = Math.min(canvas.width, Math.max(1, bounds.left + bounds.width)); + var y1 = Math.min(canvas.height - 1, Math.max(0, bounds.top)); + var y2 = Math.min(canvas.height, Math.max(1, bounds.top + bounds.height)); + croppedCanvas.width = bounds.width; + croppedCanvas.height = bounds.height; + log("Cropping canvas at:", "left:", bounds.left, "top:", bounds.top, "width:", (x2 - x1), "height:", (y2 - y1)); + log("Resulting crop with width", bounds.width, "and height", bounds.height, " with x", x1, "and y", y1); + croppedCanvas.getContext("2d").drawImage(canvas, x1, y1, x2 - x1, y2 - y1, bounds.x, bounds.y, x2 - x1, y2 - y1); + return croppedCanvas; + } + + function documentWidth(doc) { + return Math.max( + Math.max(doc.body.scrollWidth, doc.documentElement.scrollWidth), + Math.max(doc.body.offsetWidth, doc.documentElement.offsetWidth), + Math.max(doc.body.clientWidth, doc.documentElement.clientWidth) + ); + } + + function documentHeight(doc) { + return Math.max( + Math.max(doc.body.scrollHeight, doc.documentElement.scrollHeight), + Math.max(doc.body.offsetHeight, doc.documentElement.offsetHeight), + Math.max(doc.body.clientHeight, doc.documentElement.clientHeight) + ); + } + + function smallImage() { + return "data:image/gif;base64,R0lGODlhAQABAIAAAAAAAP///yH5BAEAAAAALAAAAAABAAEAAAIBRAA7"; + } + + function isIE9() { + return document.documentMode && document.documentMode <= 9; + } + +// https://github.com/niklasvh/html2canvas/issues/503 + function cloneNodeIE9(node, javascriptEnabled) { + var clone = node.nodeType === 3 ? document.createTextNode(node.nodeValue) : node.cloneNode(false); + + var child = node.firstChild; + while (child) { + if (javascriptEnabled === true || child.nodeType !== 1 || child.nodeName !== 'SCRIPT') { + clone.appendChild(cloneNodeIE9(child, javascriptEnabled)); + } + child = child.nextSibling; + } + + return clone; + } + + function createWindowClone(ownerDocument, containerDocument, width, height, options, x, y) { + labelCanvasElements(ownerDocument); + var documentElement = isIE9() ? cloneNodeIE9(ownerDocument.documentElement, options.javascriptEnabled) : ownerDocument.documentElement.cloneNode(true); + var container = containerDocument.createElement("iframe"); + + container.className = "html2canvas-container"; + container.style.visibility = "hidden"; + container.style.position = "fixed"; + container.style.left = "-10000px"; + container.style.top = "0px"; + container.style.border = "0"; + container.width = width; + container.height = height; + container.scrolling = "no"; // ios won't scroll without it + containerDocument.body.appendChild(container); + + return new Promise(function (resolve) { + var documentClone = container.contentWindow.document; + + cloneNodeValues(ownerDocument.documentElement, documentElement, "textarea"); + cloneNodeValues(ownerDocument.documentElement, documentElement, "select"); + + /* Chrome doesn't detect relative background-images assigned in inline + + + + + +
+ + +
+
+ +
+
+ +
+ + + diff --git a/output.cyjs b/output.cyjs new file mode 100644 index 0000000..3b33a4c --- /dev/null +++ b/output.cyjs @@ -0,0 +1,679 @@ +{ + "format_version" : "1.0", + "generated_by" : "cytoscape-3.2.1", + "target_cytoscapejs_version" : "~2.1", + "data" : { + "shared_name" : "Pathway", + "name" : "TP53 Network", + "SUID" : 49, + "__Annotations" : [ ], + "selected" : true + },"elements" : { + "nodes" : [ { + "data" : { + "id" : "b6fd7", + "SUID" : "b6fd7","shared_name" : "TP73alpha","name" : "TP73alpha","Type":"Protein","XrefId":"O15350","Height":27,"Width":80.75,"LabelSize":10,"GraphId":"b6fd7","Valign":"Middle","Color":"ff0033","XrefDatasource":"Uniprot-TrEMBL","selected" : false + }, + "position" : { + "x" : 941.125, + "y" : 125.5 + }, + "selected" : false + },{ + "data" : { + "id" : "e2998", + "SUID" : "e2998","shared_name" : "ATM","name" : "ATM","Type":"GeneProduct","XrefId":"ENSG00000149311","Height":21.5,"Width":77.5,"LabelSize":10,"GraphId":"e2998","Valign":"Middle","XrefDatasource":"Ensembl","selected" : false + }, + "position" : { + "x" : 513.75, + "y" : 205.25 + }, + "selected" : false + },{ + "data" : { + "id" : "b1117", + "SUID" : "b1117","shared_name" : "ABL1","name" : "ABL1","Type":"GeneProduct","XrefId":"25","Height":20.5,"Width":78.5,"LabelSize":10,"GraphId":"b1117","Valign":"Middle","XrefDatasource":"Entrez Gene","selected" : false + }, + "position" : { + "x" : 632.25, + "y" : 205.25 + }, + "selected" : false + },{ + "data" : { + "id" : "acbaf", + "SUID" : "acbaf","shared_name" : "TP73zeta","name" : "TP73zeta","Type":"Protein","XrefId":"O15350","Height":29,"Width":83,"LabelSize":10,"GraphId":"acbaf","Valign":"Middle","Color":"ff3333","XrefDatasource":"Uniprot-TrEMBL","selected" : false + }, + "position" : { + "x" : 941.5, + "y" : 226.5 + }, + "selected" : false + },{ + "data" : { + "id" : "baf57", + "SUID" : "baf57","shared_name" : "BAX","name" : "BAX","Type":"GeneProduct","XrefId":"581","Height":22,"Width":64,"LabelSize":10,"GraphId":"baf57","Valign":"Middle","XrefDatasource":"Entrez Gene","selected" : false + }, + "position" : { + "x" : 537.5, + "y" : 318 + }, + "selected" : false + },{ + "data" : { + "id" : "cae10", + "SUID" : "cae10","shared_name" : "TP73beta","name" : "TP73beta","Type":"Protein","XrefId":"O15350","Height":28,"Width":81,"LabelSize":10,"GraphId":"cae10","Valign":"Middle","Color":"ff3333","XrefDatasource":"Uniprot-TrEMBL","selected" : false + }, + "position" : { + "x" : 941.5, + "y" : 160 + }, + "selected" : false + },{ + "data" : { + "id" : "f9ce7", + "SUID" : "f9ce7","shared_name" : "DeltaNp63beta","name" : "DeltaNp63beta","Type":"Protein","XrefId":"Q9H3D4","Height":27.5,"Width":69.5,"LabelSize":10,"GraphId":"f9ce7","Valign":"Middle","Color":"ff3333","XrefDatasource":"Uniprot-TrEMBL","selected" : false + }, + "position" : { + "x" : 775.25, + "y" : 783.25 + }, + "selected" : false + },{ + "data" : { + "id" : "f145f", + "SUID" : "f145f","shared_name" : "TAp63alpha","name" : "TAp63alpha","Type":"Protein","XrefId":"Q9H3D4","Height":28,"Width":68,"LabelSize":10,"GraphId":"f145f","Valign":"Middle","Color":"ff3333","XrefDatasource":"Uniprot-TrEMBL","selected" : false + }, + "position" : { + "x" : 774, + "y" : 660 + }, + "selected" : false + },{ + "data" : { + "id" : "b564d", + "SUID" : "b564d","shared_name" : "TP73delta","name" : "TP73delta","Type":"Protein","XrefId":"O15350","Height":28,"Width":81,"LabelSize":10,"GraphId":"b564d","Valign":"Middle","Color":"ff3333","XrefDatasource":"Uniprot-TrEMBL","selected" : false + }, + "position" : { + "x" : 941.5, + "y" : 193 + }, + "selected" : false + },{ + "data" : { + "id" : "cee8f", + "SUID" : "cee8f","shared_name" : "TP53","name" : "TP53","Type":"GeneProduct","XrefId":"7157","Height":20,"Width":80,"LabelSize":10,"GraphId":"cee8f","Valign":"Middle","XrefDatasource":"Entrez Gene","selected" : false + }, + "position" : { + "x" : 596.5, + "y" : 487 + }, + "selected" : false + },{ + "data" : { + "id" : "cac78", + "SUID" : "cac78","shared_name" : "MYC","name" : "MYC","Type":"GeneProduct","XrefId":"4609","Height":20,"Width":80,"LabelSize":10,"GraphId":"cac78","Valign":"Middle","XrefDatasource":"Entrez Gene","selected" : false + }, + "position" : { + "x" : 736.5, + "y" : 488 + }, + "selected" : false + },{ + "data" : { + "id" : "b806c", + "SUID" : "b806c","shared_name" : "TAp63gamma","name" : "TAp63gamma","Type":"Protein","XrefId":"Q9H3D4","Height":26,"Width":68,"LabelSize":10,"GraphId":"b806c","Valign":"Middle","Color":"ff3333","XrefDatasource":"Uniprot-TrEMBL","selected" : false + }, + "position" : { + "x" : 775, + "y" : 721 + }, + "selected" : false + },{ + "data" : { + "id" : "ab99e", + "SUID" : "ab99e","shared_name" : "TP73 Delta Np73","name" : "TP73 Delta Np73","Type":"Protein","XrefId":"O15350","Height":27,"Width":84,"LabelSize":10,"GraphId":"ab99e","Valign":"Middle","Color":"ff3333","XrefDatasource":"Uniprot-TrEMBL","selected" : false + }, + "position" : { + "x" : 941.5, + "y" : 320.5 + }, + "selected" : false + },{ + "data" : { + "id" : "e030c", + "SUID" : "e030c","shared_name" : "TP63","name" : "TP63","Type":"GeneProduct","XrefId":"8626","Height":25,"Width":66,"LabelSize":10,"GraphId":"e030c","Valign":"Middle","XrefDatasource":"Entrez Gene","selected" : false + }, + "position" : { + "x" : 904, + "y" : 736.5 + }, + "selected" : false + },{ + "data" : { + "id" : "ba5fa", + "SUID" : "ba5fa","shared_name" : "TP73gamma","name" : "TP73gamma","Type":"Protein","XrefId":"O15350","Height":23,"Width":82,"LabelSize":10,"GraphId":"ba5fa","Valign":"Middle","Color":"ff3333","XrefDatasource":"Uniprot-TrEMBL","selected" : false + }, + "position" : { + "x" : 941.5, + "y" : 258.5 + }, + "selected" : false + },{ + "data" : { + "id" : "f6c0f", + "SUID" : "f6c0f","shared_name" : "TP73epsilon","name" : "TP73epsilon","Type":"Protein","XrefId":"O15350","Height":26,"Width":84,"LabelSize":10,"GraphId":"f6c0f","Valign":"Middle","Color":"ff3333","XrefDatasource":"Uniprot-TrEMBL","selected" : false + }, + "position" : { + "x" : 941.5, + "y" : 289 + }, + "selected" : false + },{ + "data" : { + "id" : "ab943", + "SUID" : "ab943","shared_name" : "DelatNp63alpha","name" : "DelatNp63alpha","Type":"Protein","XrefId":"Q9H3D4","Height":26.5,"Width":70.5,"LabelSize":10,"GraphId":"ab943","Valign":"Middle","Color":"ff3333","XrefDatasource":"Uniprot-TrEMBL","selected" : false + }, + "position" : { + "x" : 775.25, + "y" : 751.75 + }, + "selected" : false + },{ + "data" : { + "id" : "a0a73", + "SUID" : "a0a73","shared_name" : "DeltaNp63gamma","name" : "DeltaNp63gamma","Type":"Protein","XrefId":"Q9H3D4","Height":27.5,"Width":68.5,"LabelSize":10,"GraphId":"a0a73","Valign":"Middle","Color":"ff3333","XrefDatasource":"Uniprot-TrEMBL","selected" : false + }, + "position" : { + "x" : 775.25, + "y" : 814.25 + }, + "selected" : false + },{ + "data" : { + "id" : "a8890", + "SUID" : "a8890","shared_name" : "TAp63beta","name" : "TAp63beta","Type":"Protein","XrefId":"Q9H3D4","Height":27,"Width":69.5,"LabelSize":10,"GraphId":"a8890","Valign":"Middle","Color":"ff3333","XrefDatasource":"Uniprot-TrEMBL","selected" : false + }, + "position" : { + "x" : 775.25, + "y" : 691.5 + }, + "selected" : false + },{ + "data" : { + "id" : "ea18f", + "SUID" : "ea18f","shared_name" : "MDM2","name" : "MDM2","Type":"GeneProduct","XrefId":"ENSG00000135679","Height":20,"Width":68.5,"LabelSize":10,"GraphId":"ea18f","Valign":"Middle","XrefDatasource":"Ensembl","selected" : false + }, + "position" : { + "x" : 612.75, + "y" : 318 + }, + "selected" : false + },{ + "data" : { + "id" : "d571f", + "SUID" : "d571f","shared_name" : "GADD45A","name" : "GADD45A","Type":"GeneProduct","XrefId":"1647","Height":23,"Width":70.5,"LabelSize":10,"GraphId":"d571f","Valign":"Middle","XrefDatasource":"Entrez Gene","selected" : false + }, + "position" : { + "x" : 460.25, + "y" : 319.5 + }, + "selected" : false + },{ + "data" : { + "id" : "b2ed9", + "SUID" : "b2ed9","shared_name" : "SUMO-1","name" : "SUMO-1","Type":"Protein","XrefId":"7341","Height":21.5,"Width":68,"LabelSize":10,"GraphId":"b2ed9","Valign":"Middle","XrefDatasource":"Entrez Gene","selected" : false + }, + "position" : { + "x" : 560, + "y" : 562.25 + }, + "selected" : false + },{ + "data" : { + "id" : "c2a8f", + "SUID" : "c2a8f","shared_name" : "PMAIP1","name" : "PMAIP1","Type":"GeneProduct","XrefId":"5366","Height":24.5,"Width":64.5,"LabelSize":10,"GraphId":"c2a8f","Valign":"Middle","XrefDatasource":"Entrez Gene","selected" : false + }, + "position" : { + "x" : 390.75, + "y" : 584.75 + }, + "selected" : false + },{ + "data" : { + "id" : "cfd0f", + "SUID" : "cfd0f","shared_name" : "BBC3","name" : "BBC3","Type":"GeneProduct","XrefId":"27113","Height":24.5,"Width":65.5,"LabelSize":10,"GraphId":"cfd0f","Valign":"Middle","XrefDatasource":"Entrez Gene","selected" : false + }, + "position" : { + "x" : 391.25, + "y" : 614.75 + }, + "selected" : false + },{ + "data" : { + "id" : "cf1dd", + "SUID" : "cf1dd","shared_name" : "CDKN2A","name" : "CDKN2A","Type":"GeneProduct","XrefId":"1029","Height":23,"Width":65,"LabelSize":10,"GraphId":"cf1dd","Valign":"Middle","XrefDatasource":"Entrez Gene","selected" : false + }, + "position" : { + "x" : 845.5, + "y" : 487.5 + }, + "selected" : false + },{ + "data" : { + "id" : "b81a9", + "SUID" : "b81a9","shared_name" : "BOK","name" : "BOK","Type":"GeneProduct","XrefId":"666","Height":25,"Width":66,"LabelSize":10,"GraphId":"b81a9","Valign":"Middle","XrefDatasource":"Entrez Gene","selected" : false + }, + "position" : { + "x" : 390, + "y" : 554.5 + }, + "selected" : false + },{ + "data" : { + "id" : "a390d", + "SUID" : "a390d","shared_name" : "CDKN1A","name" : "CDKN1A","Type":"GeneProduct","XrefId":"ENSG00000124762","Height":23,"Width":54.5,"LabelSize":10,"GraphId":"a390d","Valign":"Middle","XrefDatasource":"Ensembl","selected" : false + }, + "position" : { + "x" : 682.75, + "y" : 319.5 + }, + "selected" : false + },{ + "data" : { + "id" : "dd842", + "SUID" : "dd842","shared_name" : "IGFBP-3","name" : "IGFBP-3","Type":"GeneProduct","XrefId":"Hs.146732","Height":24.5,"Width":65.5,"LabelSize":10,"GraphId":"dd842","Valign":"Middle","XrefDatasource":"UniGene","selected" : false + }, + "position" : { + "x" : 904, + "y" : 761.25 + }, + "selected" : false + },{ + "data" : { + "id" : "d288f", + "SUID" : "d288f","shared_name" : "TP73","name" : "TP73","Type":"GeneProduct","XrefId":"7161","Height":23.5,"Width":70.5,"LabelSize":10,"GraphId":"d288f","Valign":"Middle","XrefDatasource":"Entrez Gene","selected" : false + }, + "position" : { + "x" : 1065.75, + "y" : 222.25 + }, + "selected" : false + },{ + "data" : { + "id" : "e8257", + "SUID" : "e8257","shared_name" : "OTX2","name" : "OTX2","Type":"GeneProduct","XrefId":"ENSG00000165588","Height":18.5,"Width":62.5,"LabelSize":10,"GraphId":"e8257","Valign":"Middle","XrefDatasource":"Ensembl","selected" : false + }, + "position" : { + "x" : 458.75, + "y" : 441.75 + }, + "selected" : false + },{ + "data" : { + "id" : "fbd89", + "SUID" : "fbd89","shared_name" : "TNFSF10","name" : "TNFSF10","Type":"GeneProduct","XrefId":"8743","Height":24.5,"Width":61.5,"LabelSize":10,"GraphId":"fbd89","Valign":"Middle","XrefDatasource":"Entrez Gene","selected" : false + }, + "position" : { + "x" : 537.25, + "y" : 244.75 + }, + "selected" : false + },{ + "data" : { + "id" : "a889a", + "SUID" : "a889a","shared_name" : "BID","name" : "BID","Type":"GeneProduct","XrefId":"ENSG00000015475","Height":24.5,"Width":59.5,"LabelSize":10,"GraphId":"a889a","Valign":"Middle","XrefDatasource":"Ensembl","selected" : false + }, + "position" : { + "x" : 402.25, + "y" : 230.75 + }, + "selected" : false + },{ + "data" : { + "id" : "cc711", + "SUID" : "cc711","shared_name" : "BCL2","name" : "BCL2","Type":"GeneProduct","XrefId":"ENSG00000171791","Height":24.5,"Width":58.5,"LabelSize":10,"GraphId":"cc711","Valign":"Middle","XrefDatasource":"Ensembl","selected" : false + }, + "position" : { + "x" : 402.75, + "y" : 258.75 + }, + "selected" : false + },{ + "data" : { + "id" : "a89bb", + "SUID" : "a89bb","shared_name" : "Grown arrest and apoptosis","name" : "Grown arrest and apoptosis","Height":20,"Width":143,"LabelSize":10,"GraphId":"a89bb","Valign":"Middle","FillColor":"ffffff","selected" : false + }, + "position" : { + "x" : 234.5, + "y" : 482 + }, + "selected" : false + },{ + "data" : { + "id" : "a3afb", + "SUID" : "a3afb","shared_name" : "Grown arrest and apoptosis","name" : "Grown arrest and apoptosis","Height":20,"Width":147,"LabelSize":10,"GraphId":"a3afb","Valign":"Middle","FillColor":"ffffff","selected" : false + }, + "position" : { + "x" : 709.5, + "y" : 68 + }, + "selected" : false + },{ + "data" : { + "id" : "d5507", + "SUID" : "d5507","shared_name" : "Reduces transcriptional activity but does not induce degradation","name" : "Reduces transcriptional activity but does not induce degradation","Height":20,"Width":324,"LabelSize":10,"GraphId":"d5507","Valign":"Middle","FillColor":"ffffff","selected" : false + }, + "position" : { + "x" : 385, + "y" : 789 + }, + "selected" : false + },{ + "data" : { + "id" : "bf8fe", + "SUID" : "bf8fe","shared_name" : "Apoptosis","name" : "Apoptosis","Height":20,"Width":51,"LabelSize":10,"GraphId":"bf8fe","Valign":"Middle","FillColor":"ffffff","selected" : false + }, + "position" : { + "x" : 896.5, + "y" : 664 + }, + "selected" : false + },{ + "data" : { + "id" : "d3743", + "SUID" : "d3743","shared_name" : "Different isoforms of the protein","name" : "Different isoforms of the protein","Height":20,"Width":155,"LabelSize":10,"GraphId":"d3743","Valign":"Middle","FillColor":"ffffff","selected" : false + }, + "position" : { + "x" : 310.5, + "y" : 815 + }, + "selected" : false + },{ + "data" : { + "id" : "a3831", + "SUID" : "a3831","Height":18.118178460751245,"Width":96.23781496210933,"LabelSize":10,"GraphId":"a3831","Valign":"Middle","IsGPMLShape" : true,"Shape":"Brace","Rotation":"4.67364868272121","selected" : false + }, + "position" : { + "x" : 721.9988899555982, + "y" : 790.2713608544343 + }, + "selected" : false + },{ + "data" : { + "id" : "df593", + "SUID" : "df593","Height":18.97805729188017,"Width":96.00520812883471,"LabelSize":10,"GraphId":"df593","Valign":"Middle","IsGPMLShape" : true,"Shape":"Brace","Rotation":"4.722841561369899","selected" : false + }, + "position" : { + "x" : 720.4793148656194, + "y" : 688.9788778557383 + }, + "selected" : false + },{ + "data" : { + "id" : "bc0e8", + "SUID" : "bc0e8","Height":20.71097184885804,"Width":194.24228243345232,"LabelSize":10,"GraphId":"bc0e8","Valign":"Middle","IsGPMLShape" : true,"Shape":"Brace","Rotation":"4.741696547329296","selected" : false + }, + "position" : { + "x" : 882.4949379836745, + "y" : 207.61711544577548 + }, + "selected" : false + },{ + "data" : { + "id" : "c46f0", + "SUID" : "c46f0","Height":9.02223437967779,"Width":89.00458992572263,"LabelSize":10,"GraphId":"c46f0","Valign":"Middle","IsGPMLShape" : true,"Shape":"Brace","Rotation":"1.5547549221482528","selected" : false + }, + "position" : { + "x" : 821.5284019745886, + "y" : 691.4995443533489 + }, + "selected" : false + },{ + "data" : { + "id" : "a013d", + "SUID" : "a013d","Height":19.5,"Width":51.5,"LabelSize":10,"GraphId":"a013d","Valign":"Middle","IsGPMLShape" : true,"Shape":"Rectangle","Rotation":"0","Color":"ff3333","selected" : false + }, + "position" : { + "x" : 196.25, + "y" : 814.25 + }, + "selected" : false + }], + "edges" : [ {"data" : { + "id" : "ea694", + "SUID" : "ea694","BiopaxRef":"ada","LineThickness":1.0,"EndArrow":"Arrow","Coords":[{"x":552.5,"y":205.25},{"x":593.0,"y":205.25}],"GraphId":"ea694","ZOrder":"12288","source":"e2998","target":"b1117", "StartArrow" : "Line", + "selected" : false + }, + "selected" : false + },{"data" : { + "id" : "d44af", + "SUID" : "d44af","LineThickness":1.0,"EndArrow":"Arrow","Coords":[{"x":696.5,"y":488.0},{"x":636.5,"y":487.0}],"GraphId":"d44af","ZOrder":"12288","source":"cac78","target":"cee8f", "StartArrow" : "Line", + "selected" : false + }, + "selected" : false + },{"data" : { + "id" : "aae7e", + "SUID" : "aae7e","BiopaxRef":"f3c","LineThickness":1.0,"EndArrow":"TBar","Coords":[{"x":899.5,"y":313.75},{"x":616.5,"y":477.0}],"GraphId":"aae7e","ZOrder":"12288","source":"ab99e","target":"cee8f", "StartArrow" : "Line", + "selected" : false + }, + "selected" : false + },{"data" : { + "id" : "c2e56", + "SUID" : "c2e56","BiopaxRef":"c70","LineThickness":1.0,"EndArrow":"Arrow","Coords":[{"x":710.4890626138044,"y":688.9788778557383},{"x":616.5,"y":497.0}],"GraphId":"c2e56","ZOrder":"12288","source":"df593","target":"cee8f", "StartArrow" : "Line", + "selected" : false + }, + "selected" : false + },{"data" : { + "id" : "abd8b", + "SUID" : "abd8b","BiopaxRef":"a1e","LineThickness":1.0,"EndArrow":"TBar","Coords":[{"x":711.0829233169326,"y":790.2713608544345},{"x":576.5,"y":497.0}],"GraphId":"abd8b","ZOrder":"12288","source":"a3831","target":"cee8f", "StartArrow" : "Line", + "selected" : false + }, + "selected" : false + },{"data" : { + "id" : "b9169", + "SUID" : "b9169","LineThickness":1.0,"EndArrow":"Arrow","Coords":[{"x":736.5,"y":478.0},{"x":869.2979221880635,"y":207.61711544577537}],"GraphId":"b9169","ZOrder":"12288","source":"cac78","target":"bc0e8", "StartArrow" : "Line", + "selected" : false + }, + "selected" : false + },{"data" : { + "id" : "d081a", + "SUID" : "d081a","BiopaxRef":"af2","LineThickness":1.0,"EndArrow":"Arrow","Coords":[{"x":671.5,"y":205.25},{"x":869.2979221880635,"y":207.61711544577537}],"GraphId":"d081a","ZOrder":"12288","source":"b1117","target":"bc0e8", "StartArrow" : "Line", + "selected" : false + }, + "selected" : false + },{"data" : { + "id" : "iddcf2b769", + "SUID" : "iddcf2b769","LineThickness":1.0,"EndArrow":"Arrow","Coords":[{"x":556.5,"y":487.0},{"x":306.0,"y":482.0}],"GraphId":"iddcf2b769","ZOrder":"12288","source":"cee8f","target":"a89bb", "StartArrow" : "Line", + "selected" : false + }, + "selected" : false + },{"data" : { + "id" : "id9889382a", + "SUID" : "id9889382a","LineThickness":1.0,"EndArrow":"Arrow","Coords":[{"x":776.5,"y":488.0},{"x":813.0,"y":487.5}],"GraphId":"id9889382a","ZOrder":"12288","source":"cac78","target":"cf1dd", "StartArrow" : "Line", + "selected" : false + }, + "selected" : false + },{"data" : { + "id" : "idc8239132", + "SUID" : "idc8239132","LineThickness":1.0,"ConnectorType":"Elbow","Coords":[{"x":877.0,"y":487.0},{"x":842.0,"y":443.0},{"x":631.0,"y":399.0}],"GraphId":"idc8239132","ZOrder":"12288", "StartArrow" : "Line", + "selected" : false + }, + "selected" : false + },{"data" : { + "id" : "id1784ab3d", + "SUID" : "id1784ab3d","LineThickness":1.0,"ConnectorType":"Elbow","Coords":[{"x":475.0,"y":205.25},{"x":298.0,"y":283.625},{"x":437.0,"y":362.0},{"x":576.0,"y":406.5},{"x":576.0,"y":451.0}],"GraphId":"id1784ab3d","ZOrder":"12288","source":"e2998", "StartArrow" : "Line", + "selected" : false + }, + "selected" : false + },{"data" : { + "id" : "idd6fbd36", + "SUID" : "idd6fbd36","LineThickness":1.0,"LineStyle" : "Dashed","Coords":[{"x":612.75,"y":308.0},{"x":615.0,"y":132.0}],"GraphId":"idd6fbd36","ZOrder":"12288","source":"ea18f", "StartArrow" : "Line", + "selected" : false + }, + "selected" : false + },{"data" : { + "id" : "idb2a3006f", + "SUID" : "idb2a3006f","LineThickness":1.0,"LineStyle" : "Dashed","Coords":[{"x":170.0,"y":789.0},{"x":221.0,"y":789.0}],"GraphId":"idb2a3006f","ZOrder":"12288", "StartArrow" : "Line", + "selected" : false + }, + "selected" : false + },{"data" : { + "id" : "id8867bce2", + "SUID" : "id8867bce2","LineThickness":1.0,"EndArrow":"Arrow","Coords":[{"x":808.0,"y":660.0},{"x":871.0,"y":664.0}],"GraphId":"id8867bce2","ZOrder":"12288","source":"f145f","target":"bf8fe", "StartArrow" : "Line", + "selected" : false + }, + "selected" : false + },{"data" : { + "id" : "idaa7fed1f", + "SUID" : "idaa7fed1f","LineThickness":1.0,"EndArrow":"TBar","Coords":[{"x":810.5,"y":758.375},{"x":871.25,"y":761.25}],"GraphId":"idaa7fed1f","ZOrder":"12288","source":"ab943","target":"dd842", "StartArrow" : "Line", + "selected" : false + }, + "selected" : false + },{"data" : { + "id" : "idf797ab33", + "SUID" : "idf797ab33","LineThickness":1.0,"EndArrow":"TBar","Coords":[{"x":957.0,"y":693.0},{"x":826.7527874664074,"y":691.4995443533489}],"GraphId":"idf797ab33","ZOrder":"12288","target":"c46f0", "StartArrow" : "Line", + "selected" : false + }, + "selected" : false + },{"data" : { + "id" : "id8e42b9e5", + "SUID" : "id8e42b9e5","LineThickness":1.0,"Coords":[{"x":962.5,"y":334.0},{"x":957.0,"y":692.0}],"GraphId":"id8e42b9e5","ZOrder":"12288","source":"ab99e", "StartArrow" : "Line", + "selected" : false + }, + "selected" : false + },{"data" : { + "id" : "id28e07596", + "SUID" : "id28e07596","LineThickness":1.0,"LineStyle" : "Dashed","Coords":[{"x":614.0,"y":138.0},{"x":866.0,"y":139.0}],"GraphId":"id28e07596","ZOrder":"12288", "StartArrow" : "Line", + "selected" : false + }, + "selected" : false + },{"data" : { + "id" : "id3e486e28", + "SUID" : "id3e486e28","LineThickness":1.0,"LineStyle" : "Dashed","Coords":[{"x":900.75,"y":118.75},{"x":868.0,"y":120.0}],"GraphId":"id3e486e28","ZOrder":"12288","source":"b6fd7", "StartArrow" : "Line", + "selected" : false + }, + "selected" : false + },{"data" : { + "id" : "ide9adea14", + "SUID" : "ide9adea14","LineThickness":1.0,"LineStyle" : "Dashed","Coords":[{"x":869.0,"y":122.0},{"x":870.0,"y":159.0}],"GraphId":"ide9adea14","ZOrder":"12288", "StartArrow" : "Line", + "selected" : false + }, + "selected" : false + },{"data" : { + "id" : "idc22de6cc", + "SUID" : "idc22de6cc","LineThickness":1.0,"LineStyle" : "Dashed","Coords":[{"x":872.0,"y":161.0},{"x":901.0,"y":160.0}],"GraphId":"idc22de6cc","ZOrder":"12288","target":"cae10", "StartArrow" : "Line", + "selected" : false + }, + "selected" : false + },{"data" : { + "id" : "iddf680248", + "SUID" : "iddf680248","LineThickness":1.0,"EndArrow":"Arrow","Coords":[{"x":556.5,"y":487.0},{"x":436.0,"y":584.5}],"GraphId":"iddf680248","ZOrder":"12288","source":"cee8f", "StartArrow" : "Line", + "selected" : false + }, + "selected" : false + },{"data" : { + "id" : "id2225e448", + "SUID" : "id2225e448","LineThickness":1.0,"EndArrow":"TBar","Coords":[{"x":612.75,"y":328.0},{"x":616.5,"y":477.0}],"GraphId":"id2225e448","ZOrder":"12288","source":"ea18f","target":"cee8f", "StartArrow" : "Line", + "selected" : false + }, + "selected" : false + },{"data" : { + "id" : "id41ab3747", + "SUID" : "id41ab3747","LineThickness":1.0,"EndArrow":"Arrow","Coords":[{"x":869.2979221880635,"y":207.61711544577537},{"x":783.0,"y":68.0}],"GraphId":"id41ab3747","ZOrder":"12288","source":"bc0e8","target":"a3afb", "StartArrow" : "Line", + "selected" : false + }, + "selected" : false + },{"data" : { + "id" : "id5b77ae9a", + "SUID" : "id5b77ae9a","LineThickness":1.0,"EndArrow":"TBar","Coords":[{"x":631.0,"y":399.0},{"x":629.875,"y":328.0}],"GraphId":"id5b77ae9a","ZOrder":"12288","target":"ea18f", "StartArrow" : "Line", + "selected" : false + }, + "selected" : false + },{"data" : { + "id" : "id7efc9f41", + "SUID" : "id7efc9f41","LineThickness":1.0,"EndArrow":"Arrow","Coords":[{"x":869.2979221880635,"y":207.61711544577537},{"x":567.5,"y":295.0}],"GraphId":"id7efc9f41","ZOrder":"12288","source":"bc0e8", "StartArrow" : "Line", + "selected" : false + }, + "selected" : false + },{"data" : { + "id" : "idad814d38", + "SUID" : "idad814d38","LineThickness":1.0,"EndArrow":"Arrow","Coords":[{"x":871.0,"y":736.5},{"x":822.5,"y":737.0}],"GraphId":"idad814d38","ZOrder":"12288","source":"e030c", "StartArrow" : "Line", + "selected" : false + }, + "selected" : false + },{"data" : { + "id" : "id9d04ce8b", + "SUID" : "id9d04ce8b","LineThickness":1.0,"EndArrow":"Arrow","Coords":[{"x":596.5,"y":477.0},{"x":595.625,"y":328.0}],"GraphId":"id9d04ce8b","ZOrder":"12288","source":"cee8f","target":"ea18f", "StartArrow" : "Line", + "selected" : false + }, + "selected" : false + },{"data" : { + "id" : "idca15b6b1", + "SUID" : "idca15b6b1","LineThickness":1.0,"EndArrow":"Arrow","Coords":[{"x":576.0,"y":450.0},{"x":576.5,"y":477.0}],"GraphId":"idca15b6b1","ZOrder":"12288","target":"cee8f", "StartArrow" : "Line", + "selected" : false + }, + "selected" : false + },{"data" : { + "id" : "id67d6bee4", + "SUID" : "id67d6bee4","LineThickness":1.0,"EndArrow":"Arrow","Coords":[{"x":560.0,"y":551.5},{"x":576.5,"y":497.0}],"GraphId":"id67d6bee4","ZOrder":"12288","source":"b2ed9","target":"cee8f", "StartArrow" : "Line", + "selected" : false + }, + "selected" : false + },{"data" : { + "id" : "id2b489f88", + "SUID" : "id2b489f88","LineThickness":1.0,"EndArrow":"Arrow","Coords":[{"x":1030.5,"y":222.25},{"x":995.5,"y":223.0}],"GraphId":"id2b489f88","ZOrder":"12288","source":"d288f", "StartArrow" : "Line", + "selected" : false + }, + "selected" : false + },{"data" : { + "id" : "id5c1c906a", + "SUID" : "id5c1c906a","LineThickness":1.0,"ConnectorType":"Elbow","Coords":[{"x":711.0829233169326,"y":790.2713608544345},{"x":690.0,"y":688.0}],"GraphId":"id5c1c906a","ZOrder":"12288","source":"a3831", "StartArrow" : "Line", + "selected" : false + }, + "selected" : false + },{"data" : { + "id" : "ide395a147", + "SUID" : "ide395a147","LineThickness":1.0,"EndArrow":"TBar","Coords":[{"x":690.0,"y":689.0},{"x":710.4890626138044,"y":688.9788778557383}],"GraphId":"ide395a147","ZOrder":"12288","target":"df593", "StartArrow" : "Line", + "selected" : false + }, + "selected" : false + },{"data" : { + "id" : "id72cb0404", + "SUID" : "id72cb0404","BiopaxRef":"da3","LineThickness":1.0,"EndArrow":"Arrow","Coords":[{"x":490.0,"y":441.75},{"x":576.5,"y":477.0}],"GraphId":"id72cb0404","ZOrder":"12288","source":"e8257","target":"cee8f", "StartArrow" : "Line", + "selected" : false + }, + "selected" : false + },{"data" : { + "id" : "idd87a0f4b", + "SUID" : "idd87a0f4b","LineThickness":1.0,"ConnectorType":"Elbow","Coords":[{"x":899.5,"y":313.75},{"x":869.0,"y":275.375},{"x":869.0,"y":237.0}],"GraphId":"idd87a0f4b","ZOrder":"12288","source":"ab99e", "StartArrow" : "Line", + "selected" : false + }, + "selected" : false + },{"data" : { + "id" : "id8d06493a", + "SUID" : "id8d06493a","LineThickness":1.0,"EndArrow":"TBar","Coords":[{"x":869.0,"y":236.0},{"x":869.2979221880635,"y":207.61711544577537}],"GraphId":"id8d06493a","ZOrder":"12288","target":"bc0e8", "StartArrow" : "Line", + "selected" : false + }, + "selected" : false + },{"data" : { + "id" : "id2285310d", + "SUID" : "id2285310d","LineThickness":1.0,"EndArrow":"Arrow","Coords":[{"x":537.25,"y":257.0},{"x":537.5,"y":307.0}],"GraphId":"id2285310d","ZOrder":"12288","source":"fbd89","target":"baf57", "StartArrow" : "Line", + "selected" : false + }, + "selected" : false + },{"data" : { + "id" : "id87222dd3", + "SUID" : "id87222dd3","LineThickness":1.0,"EndArrow":"Arrow","Coords":[{"x":552.625,"y":257.0},{"x":576.5,"y":477.0}],"GraphId":"id87222dd3","ZOrder":"12288","source":"fbd89","target":"cee8f", "StartArrow" : "Line", + "selected" : false + }, + "selected" : false + },{"data" : { + "id" : "id96d4e215", + "SUID" : "id96d4e215","LineThickness":1.0,"EndArrow":"TBar","Coords":[{"x":506.5,"y":244.75},{"x":444.0,"y":244.75}],"GraphId":"id96d4e215","ZOrder":"12288","source":"fbd89", "StartArrow" : "Line", + "selected" : false + }, + "selected" : false + }] + } +} \ No newline at end of file diff --git a/output.cyjs~ b/output.cyjs~ new file mode 100644 index 0000000..f32e4db --- /dev/null +++ b/output.cyjs~ @@ -0,0 +1,679 @@ +{ + "format_version" : "1.0", + "generated_by" : "cytoscape-3.2.1", + "target_cytoscapejs_version" : "~2.1", + "data" : { + "shared_name" : "Pathway", + "name" : "TP53 Network", + "SUID" : 16, + "__Annotations" : [ ], + "selected" : true + },"elements" : { + "nodes" : [ { + "data" : { + "id" : "e030c", + "SUID" : "e030c","shared_name" : "TP63","name" : "TP63","Type":"GeneProduct","XrefId":"8626","Height":25,"Width":66,"LabelSize":10,"GraphId":"e030c","Valign":"Middle","XrefDatasource":"Entrez Gene","selected" : false + }, + "position" : { + "x" : 904, + "y" : 736.5 + }, + "selected" : false + },{ + "data" : { + "id" : "ba5fa", + "SUID" : "ba5fa","shared_name" : "TP73gamma","name" : "TP73gamma","Type":"Protein","XrefId":"O15350","Height":23,"Width":82,"LabelSize":10,"GraphId":"ba5fa","Valign":"Middle","Color":"ff3333","XrefDatasource":"Uniprot-TrEMBL","selected" : false + }, + "position" : { + "x" : 941.5, + "y" : 258.5 + }, + "selected" : false + },{ + "data" : { + "id" : "f6c0f", + "SUID" : "f6c0f","shared_name" : "TP73epsilon","name" : "TP73epsilon","Type":"Protein","XrefId":"O15350","Height":26,"Width":84,"LabelSize":10,"GraphId":"f6c0f","Valign":"Middle","Color":"ff3333","XrefDatasource":"Uniprot-TrEMBL","selected" : false + }, + "position" : { + "x" : 941.5, + "y" : 289 + }, + "selected" : false + },{ + "data" : { + "id" : "ab943", + "SUID" : "ab943","shared_name" : "DelatNp63alpha","name" : "DelatNp63alpha","Type":"Protein","XrefId":"Q9H3D4","Height":26.5,"Width":70.5,"LabelSize":10,"GraphId":"ab943","Valign":"Middle","Color":"ff3333","XrefDatasource":"Uniprot-TrEMBL","selected" : false + }, + "position" : { + "x" : 775.25, + "y" : 751.75 + }, + "selected" : false + },{ + "data" : { + "id" : "a0a73", + "SUID" : "a0a73","shared_name" : "DeltaNp63gamma","name" : "DeltaNp63gamma","Type":"Protein","XrefId":"Q9H3D4","Height":27.5,"Width":68.5,"LabelSize":10,"GraphId":"a0a73","Valign":"Middle","Color":"ff3333","XrefDatasource":"Uniprot-TrEMBL","selected" : false + }, + "position" : { + "x" : 775.25, + "y" : 814.25 + }, + "selected" : false + },{ + "data" : { + "id" : "a8890", + "SUID" : "a8890","shared_name" : "TAp63beta","name" : "TAp63beta","Type":"Protein","XrefId":"Q9H3D4","Height":27,"Width":69.5,"LabelSize":10,"GraphId":"a8890","Valign":"Middle","Color":"ff3333","XrefDatasource":"Uniprot-TrEMBL","selected" : false + }, + "position" : { + "x" : 775.25, + "y" : 691.5 + }, + "selected" : false + },{ + "data" : { + "id" : "ea18f", + "SUID" : "ea18f","shared_name" : "MDM2","name" : "MDM2","Type":"GeneProduct","XrefId":"ENSG00000135679","Height":20,"Width":68.5,"LabelSize":10,"GraphId":"ea18f","Valign":"Middle","XrefDatasource":"Ensembl","selected" : false + }, + "position" : { + "x" : 612.75, + "y" : 318 + }, + "selected" : false + },{ + "data" : { + "id" : "d571f", + "SUID" : "d571f","shared_name" : "GADD45A","name" : "GADD45A","Type":"GeneProduct","XrefId":"1647","Height":23,"Width":70.5,"LabelSize":10,"GraphId":"d571f","Valign":"Middle","XrefDatasource":"Entrez Gene","selected" : false + }, + "position" : { + "x" : 460.25, + "y" : 319.5 + }, + "selected" : false + },{ + "data" : { + "id" : "b2ed9", + "SUID" : "b2ed9","shared_name" : "SUMO-1","name" : "SUMO-1","Type":"Protein","XrefId":"7341","Height":21.5,"Width":68,"LabelSize":10,"GraphId":"b2ed9","Valign":"Middle","XrefDatasource":"Entrez Gene","selected" : false + }, + "position" : { + "x" : 560, + "y" : 562.25 + }, + "selected" : false + },{ + "data" : { + "id" : "c2a8f", + "SUID" : "c2a8f","shared_name" : "PMAIP1","name" : "PMAIP1","Type":"GeneProduct","XrefId":"5366","Height":24.5,"Width":64.5,"LabelSize":10,"GraphId":"c2a8f","Valign":"Middle","XrefDatasource":"Entrez Gene","selected" : false + }, + "position" : { + "x" : 390.75, + "y" : 584.75 + }, + "selected" : false + },{ + "data" : { + "id" : "cfd0f", + "SUID" : "cfd0f","shared_name" : "BBC3","name" : "BBC3","Type":"GeneProduct","XrefId":"27113","Height":24.5,"Width":65.5,"LabelSize":10,"GraphId":"cfd0f","Valign":"Middle","XrefDatasource":"Entrez Gene","selected" : false + }, + "position" : { + "x" : 391.25, + "y" : 614.75 + }, + "selected" : false + },{ + "data" : { + "id" : "cf1dd", + "SUID" : "cf1dd","shared_name" : "CDKN2A","name" : "CDKN2A","Type":"GeneProduct","XrefId":"1029","Height":23,"Width":65,"LabelSize":10,"GraphId":"cf1dd","Valign":"Middle","XrefDatasource":"Entrez Gene","selected" : false + }, + "position" : { + "x" : 845.5, + "y" : 487.5 + }, + "selected" : false + },{ + "data" : { + "id" : "b81a9", + "SUID" : "b81a9","shared_name" : "BOK","name" : "BOK","Type":"GeneProduct","XrefId":"666","Height":25,"Width":66,"LabelSize":10,"GraphId":"b81a9","Valign":"Middle","XrefDatasource":"Entrez Gene","selected" : false + }, + "position" : { + "x" : 390, + "y" : 554.5 + }, + "selected" : false + },{ + "data" : { + "id" : "a390d", + "SUID" : "a390d","shared_name" : "CDKN1A","name" : "CDKN1A","Type":"GeneProduct","XrefId":"ENSG00000124762","Height":23,"Width":54.5,"LabelSize":10,"GraphId":"a390d","Valign":"Middle","XrefDatasource":"Ensembl","selected" : false + }, + "position" : { + "x" : 682.75, + "y" : 319.5 + }, + "selected" : false + },{ + "data" : { + "id" : "dd842", + "SUID" : "dd842","shared_name" : "IGFBP-3","name" : "IGFBP-3","Type":"GeneProduct","XrefId":"Hs.146732","Height":24.5,"Width":65.5,"LabelSize":10,"GraphId":"dd842","Valign":"Middle","XrefDatasource":"UniGene","selected" : false + }, + "position" : { + "x" : 904, + "y" : 761.25 + }, + "selected" : false + },{ + "data" : { + "id" : "d288f", + "SUID" : "d288f","shared_name" : "TP73","name" : "TP73","Type":"GeneProduct","XrefId":"7161","Height":23.5,"Width":70.5,"LabelSize":10,"GraphId":"d288f","Valign":"Middle","XrefDatasource":"Entrez Gene","selected" : false + }, + "position" : { + "x" : 1065.75, + "y" : 222.25 + }, + "selected" : false + },{ + "data" : { + "id" : "e8257", + "SUID" : "e8257","shared_name" : "OTX2","name" : "OTX2","Type":"GeneProduct","XrefId":"ENSG00000165588","Height":18.5,"Width":62.5,"LabelSize":10,"GraphId":"e8257","Valign":"Middle","XrefDatasource":"Ensembl","selected" : false + }, + "position" : { + "x" : 458.75, + "y" : 441.75 + }, + "selected" : false + },{ + "data" : { + "id" : "fbd89", + "SUID" : "fbd89","shared_name" : "TNFSF10","name" : "TNFSF10","Type":"GeneProduct","XrefId":"8743","Height":24.5,"Width":61.5,"LabelSize":10,"GraphId":"fbd89","Valign":"Middle","XrefDatasource":"Entrez Gene","selected" : false + }, + "position" : { + "x" : 537.25, + "y" : 244.75 + }, + "selected" : false + },{ + "data" : { + "id" : "a889a", + "SUID" : "a889a","shared_name" : "BID","name" : "BID","Type":"GeneProduct","XrefId":"ENSG00000015475","Height":24.5,"Width":59.5,"LabelSize":10,"GraphId":"a889a","Valign":"Middle","XrefDatasource":"Ensembl","selected" : false + }, + "position" : { + "x" : 402.25, + "y" : 230.75 + }, + "selected" : false + },{ + "data" : { + "id" : "b6fd7", + "SUID" : "b6fd7","shared_name" : "TP73alpha","name" : "TP73alpha","Type":"Protein","XrefId":"O15350","Height":27,"Width":80.75,"LabelSize":10,"GraphId":"b6fd7","Valign":"Middle","Color":"ff0033","XrefDatasource":"Uniprot-TrEMBL","selected" : false + }, + "position" : { + "x" : 941.125, + "y" : 125.5 + }, + "selected" : false + },{ + "data" : { + "id" : "e2998", + "SUID" : "e2998","shared_name" : "ATM","name" : "ATM","Type":"GeneProduct","XrefId":"ENSG00000149311","Height":21.5,"Width":77.5,"LabelSize":10,"GraphId":"e2998","Valign":"Middle","XrefDatasource":"Ensembl","selected" : false + }, + "position" : { + "x" : 513.75, + "y" : 205.25 + }, + "selected" : false + },{ + "data" : { + "id" : "b1117", + "SUID" : "b1117","shared_name" : "ABL1","name" : "ABL1","Type":"GeneProduct","XrefId":"25","Height":20.5,"Width":78.5,"LabelSize":10,"GraphId":"b1117","Valign":"Middle","XrefDatasource":"Entrez Gene","selected" : false + }, + "position" : { + "x" : 632.25, + "y" : 205.25 + }, + "selected" : false + },{ + "data" : { + "id" : "acbaf", + "SUID" : "acbaf","shared_name" : "TP73zeta","name" : "TP73zeta","Type":"Protein","XrefId":"O15350","Height":29,"Width":83,"LabelSize":10,"GraphId":"acbaf","Valign":"Middle","Color":"ff3333","XrefDatasource":"Uniprot-TrEMBL","selected" : false + }, + "position" : { + "x" : 941.5, + "y" : 226.5 + }, + "selected" : false + },{ + "data" : { + "id" : "baf57", + "SUID" : "baf57","shared_name" : "BAX","name" : "BAX","Type":"GeneProduct","XrefId":"581","Height":22,"Width":64,"LabelSize":10,"GraphId":"baf57","Valign":"Middle","XrefDatasource":"Entrez Gene","selected" : false + }, + "position" : { + "x" : 537.5, + "y" : 318 + }, + "selected" : false + },{ + "data" : { + "id" : "cae10", + "SUID" : "cae10","shared_name" : "TP73beta","name" : "TP73beta","Type":"Protein","XrefId":"O15350","Height":28,"Width":81,"LabelSize":10,"GraphId":"cae10","Valign":"Middle","Color":"ff3333","XrefDatasource":"Uniprot-TrEMBL","selected" : false + }, + "position" : { + "x" : 941.5, + "y" : 160 + }, + "selected" : false + },{ + "data" : { + "id" : "f9ce7", + "SUID" : "f9ce7","shared_name" : "DeltaNp63beta","name" : "DeltaNp63beta","Type":"Protein","XrefId":"Q9H3D4","Height":27.5,"Width":69.5,"LabelSize":10,"GraphId":"f9ce7","Valign":"Middle","Color":"ff3333","XrefDatasource":"Uniprot-TrEMBL","selected" : false + }, + "position" : { + "x" : 775.25, + "y" : 783.25 + }, + "selected" : false + },{ + "data" : { + "id" : "f145f", + "SUID" : "f145f","shared_name" : "TAp63alpha","name" : "TAp63alpha","Type":"Protein","XrefId":"Q9H3D4","Height":28,"Width":68,"LabelSize":10,"GraphId":"f145f","Valign":"Middle","Color":"ff3333","XrefDatasource":"Uniprot-TrEMBL","selected" : false + }, + "position" : { + "x" : 774, + "y" : 660 + }, + "selected" : false + },{ + "data" : { + "id" : "b564d", + "SUID" : "b564d","shared_name" : "TP73delta","name" : "TP73delta","Type":"Protein","XrefId":"O15350","Height":28,"Width":81,"LabelSize":10,"GraphId":"b564d","Valign":"Middle","Color":"ff3333","XrefDatasource":"Uniprot-TrEMBL","selected" : false + }, + "position" : { + "x" : 941.5, + "y" : 193 + }, + "selected" : false + },{ + "data" : { + "id" : "cee8f", + "SUID" : "cee8f","shared_name" : "TP53","name" : "TP53","Type":"GeneProduct","XrefId":"7157","Height":20,"Width":80,"LabelSize":10,"GraphId":"cee8f","Valign":"Middle","XrefDatasource":"Entrez Gene","selected" : false + }, + "position" : { + "x" : 596.5, + "y" : 487 + }, + "selected" : false + },{ + "data" : { + "id" : "cac78", + "SUID" : "cac78","shared_name" : "MYC","name" : "MYC","Type":"GeneProduct","XrefId":"4609","Height":20,"Width":80,"LabelSize":10,"GraphId":"cac78","Valign":"Middle","XrefDatasource":"Entrez Gene","selected" : false + }, + "position" : { + "x" : 736.5, + "y" : 488 + }, + "selected" : false + },{ + "data" : { + "id" : "b806c", + "SUID" : "b806c","shared_name" : "TAp63gamma","name" : "TAp63gamma","Type":"Protein","XrefId":"Q9H3D4","Height":26,"Width":68,"LabelSize":10,"GraphId":"b806c","Valign":"Middle","Color":"ff3333","XrefDatasource":"Uniprot-TrEMBL","selected" : false + }, + "position" : { + "x" : 775, + "y" : 721 + }, + "selected" : false + },{ + "data" : { + "id" : "ab99e", + "SUID" : "ab99e","shared_name" : "TP73 Delta Np73","name" : "TP73 Delta Np73","Type":"Protein","XrefId":"O15350","Height":27,"Width":84,"LabelSize":10,"GraphId":"ab99e","Valign":"Middle","Color":"ff3333","XrefDatasource":"Uniprot-TrEMBL","selected" : false + }, + "position" : { + "x" : 941.5, + "y" : 320.5 + }, + "selected" : false + },{ + "data" : { + "id" : "cc711", + "SUID" : "cc711","shared_name" : "BCL2","name" : "BCL2","Type":"GeneProduct","XrefId":"ENSG00000171791","Height":24.5,"Width":58.5,"LabelSize":10,"GraphId":"cc711","Valign":"Middle","XrefDatasource":"Ensembl","selected" : false + }, + "position" : { + "x" : 402.75, + "y" : 258.75 + }, + "selected" : false + },{ + "data" : { + "id" : "a89bb", + "SUID" : "a89bb","shared_name" : "Grown arrest and apoptosis","name" : "Grown arrest and apoptosis","Height":20,"Width":143,"LabelSize":10,"GraphId":"a89bb","Valign":"Middle","FillColor":"ffffff","selected" : false + }, + "position" : { + "x" : 234.5, + "y" : 482 + }, + "selected" : false + },{ + "data" : { + "id" : "a3afb", + "SUID" : "a3afb","shared_name" : "Grown arrest and apoptosis","name" : "Grown arrest and apoptosis","Height":20,"Width":147,"LabelSize":10,"GraphId":"a3afb","Valign":"Middle","FillColor":"ffffff","selected" : false + }, + "position" : { + "x" : 709.5, + "y" : 68 + }, + "selected" : false + },{ + "data" : { + "id" : "d5507", + "SUID" : "d5507","shared_name" : "Reduces transcriptional activity but does not induce degradation","name" : "Reduces transcriptional activity but does not induce degradation","Height":20,"Width":324,"LabelSize":10,"GraphId":"d5507","Valign":"Middle","FillColor":"ffffff","selected" : false + }, + "position" : { + "x" : 385, + "y" : 789 + }, + "selected" : false + },{ + "data" : { + "id" : "bf8fe", + "SUID" : "bf8fe","shared_name" : "Apoptosis","name" : "Apoptosis","Height":20,"Width":51,"LabelSize":10,"GraphId":"bf8fe","Valign":"Middle","FillColor":"ffffff","selected" : false + }, + "position" : { + "x" : 896.5, + "y" : 664 + }, + "selected" : false + },{ + "data" : { + "id" : "d3743", + "SUID" : "d3743","shared_name" : "Different isoforms of the protein","name" : "Different isoforms of the protein","Height":20,"Width":155,"LabelSize":10,"GraphId":"d3743","Valign":"Middle","FillColor":"ffffff","selected" : false + }, + "position" : { + "x" : 310.5, + "y" : 815 + }, + "selected" : false + },{ + "data" : { + "id" : "a3831", + "SUID" : "a3831","Height":18.118178460751245,"Width":96.23781496210933,"LabelSize":10,"GraphId":"a3831","Valign":"Middle","IsGPMLShape" : true,"Shape":"Brace","Rotation":"4.67364868272121","selected" : false + }, + "position" : { + "x" : 721.9988899555982, + "y" : 790.2713608544343 + }, + "selected" : false + },{ + "data" : { + "id" : "df593", + "SUID" : "df593","Height":18.97805729188017,"Width":96.00520812883471,"LabelSize":10,"GraphId":"df593","Valign":"Middle","IsGPMLShape" : true,"Shape":"Brace","Rotation":"4.722841561369899","selected" : false + }, + "position" : { + "x" : 720.4793148656194, + "y" : 688.9788778557383 + }, + "selected" : false + },{ + "data" : { + "id" : "bc0e8", + "SUID" : "bc0e8","Height":20.71097184885804,"Width":194.24228243345232,"LabelSize":10,"GraphId":"bc0e8","Valign":"Middle","IsGPMLShape" : true,"Shape":"Brace","Rotation":"4.741696547329296","selected" : false + }, + "position" : { + "x" : 882.4949379836745, + "y" : 207.61711544577548 + }, + "selected" : false + },{ + "data" : { + "id" : "c46f0", + "SUID" : "c46f0","Height":9.02223437967779,"Width":89.00458992572263,"LabelSize":10,"GraphId":"c46f0","Valign":"Middle","IsGPMLShape" : true,"Shape":"Brace","Rotation":"1.5547549221482528","selected" : false + }, + "position" : { + "x" : 821.5284019745886, + "y" : 691.4995443533489 + }, + "selected" : false + },{ + "data" : { + "id" : "a013d", + "SUID" : "a013d","Height":19.5,"Width":51.5,"LabelSize":10,"GraphId":"a013d","Valign":"Middle","IsGPMLShape" : true,"Shape":"Rectangle","Rotation":"0","Color":"ff3333","selected" : false + }, + "position" : { + "x" : 196.25, + "y" : 814.25 + }, + "selected" : false + }], + "edges" : [ {"data" : { + "id" : "id5b77ae9a", + "SUID" : "id5b77ae9a","LineThickness":1.0,"EndArrow":"TBar","Coords":[{"x":631.0,"y":399.0},{"x":629.875,"y":328.0}],"GraphId":"id5b77ae9a","ZOrder":"12288","target":"ea18f", "StartArrow" : "Line", + "selected" : false + }, + "selected" : false + },{"data" : { + "id" : "id9d04ce8b", + "SUID" : "id9d04ce8b","LineThickness":1.0,"EndArrow":"Arrow","Coords":[{"x":596.5,"y":477.0},{"x":595.625,"y":328.0}],"GraphId":"id9d04ce8b","ZOrder":"12288","source":"cee8f","target":"ea18f", "StartArrow" : "Line", + "selected" : false + }, + "selected" : false + },{"data" : { + "id" : "id9889382a", + "SUID" : "id9889382a","LineThickness":1.0,"EndArrow":"Arrow","Coords":[{"x":776.5,"y":488.0},{"x":813.0,"y":487.5}],"GraphId":"id9889382a","ZOrder":"12288","source":"cac78","target":"cf1dd", "StartArrow" : "Line", + "selected" : false + }, + "selected" : false + },{"data" : { + "id" : "idaa7fed1f", + "SUID" : "idaa7fed1f","LineThickness":1.0,"EndArrow":"TBar","Coords":[{"x":810.5,"y":758.375},{"x":871.25,"y":761.25}],"GraphId":"idaa7fed1f","ZOrder":"12288","source":"ab943","target":"dd842", "StartArrow" : "Line", + "selected" : false + }, + "selected" : false + },{"data" : { + "id" : "ea694", + "SUID" : "ea694","BiopaxRef":"ada","LineThickness":1.0,"EndArrow":"Arrow","Coords":[{"x":552.5,"y":205.25},{"x":593.0,"y":205.25}],"GraphId":"ea694","ZOrder":"12288","source":"e2998","target":"b1117", "StartArrow" : "Line", + "selected" : false + }, + "selected" : false + },{"data" : { + "id" : "id2285310d", + "SUID" : "id2285310d","LineThickness":1.0,"EndArrow":"Arrow","Coords":[{"x":537.25,"y":257.0},{"x":537.5,"y":307.0}],"GraphId":"id2285310d","ZOrder":"12288","source":"fbd89","target":"baf57", "StartArrow" : "Line", + "selected" : false + }, + "selected" : false + },{"data" : { + "id" : "idc22de6cc", + "SUID" : "idc22de6cc","LineThickness":1.0,"LineStyle" : "Dashed","Coords":[{"x":872.0,"y":161.0},{"x":901.0,"y":160.0}],"GraphId":"idc22de6cc","ZOrder":"12288","target":"cae10", "StartArrow" : "Line", + "selected" : false + }, + "selected" : false + },{"data" : { + "id" : "idca15b6b1", + "SUID" : "idca15b6b1","LineThickness":1.0,"EndArrow":"Arrow","Coords":[{"x":576.0,"y":450.0},{"x":576.5,"y":477.0}],"GraphId":"idca15b6b1","ZOrder":"12288","target":"cee8f", "StartArrow" : "Line", + "selected" : false + }, + "selected" : false + },{"data" : { + "id" : "c2e56", + "SUID" : "c2e56","BiopaxRef":"c70","LineThickness":1.0,"EndArrow":"Arrow","Coords":[{"x":710.4890626138044,"y":688.9788778557383},{"x":616.5,"y":497.0}],"GraphId":"c2e56","ZOrder":"12288","source":"df593","target":"cee8f", "StartArrow" : "Line", + "selected" : false + }, + "selected" : false + },{"data" : { + "id" : "abd8b", + "SUID" : "abd8b","BiopaxRef":"a1e","LineThickness":1.0,"EndArrow":"TBar","Coords":[{"x":711.0829233169326,"y":790.2713608544345},{"x":576.5,"y":497.0}],"GraphId":"abd8b","ZOrder":"12288","source":"a3831","target":"cee8f", "StartArrow" : "Line", + "selected" : false + }, + "selected" : false + },{"data" : { + "id" : "aae7e", + "SUID" : "aae7e","BiopaxRef":"f3c","LineThickness":1.0,"EndArrow":"TBar","Coords":[{"x":899.5,"y":313.75},{"x":616.5,"y":477.0}],"GraphId":"aae7e","ZOrder":"12288","source":"ab99e","target":"cee8f", "StartArrow" : "Line", + "selected" : false + }, + "selected" : false + },{"data" : { + "id" : "d44af", + "SUID" : "d44af","LineThickness":1.0,"EndArrow":"Arrow","Coords":[{"x":696.5,"y":488.0},{"x":636.5,"y":487.0}],"GraphId":"d44af","ZOrder":"12288","source":"cac78","target":"cee8f", "StartArrow" : "Line", + "selected" : false + }, + "selected" : false + },{"data" : { + "id" : "id87222dd3", + "SUID" : "id87222dd3","LineThickness":1.0,"EndArrow":"Arrow","Coords":[{"x":552.625,"y":257.0},{"x":576.5,"y":477.0}],"GraphId":"id87222dd3","ZOrder":"12288","source":"fbd89","target":"cee8f", "StartArrow" : "Line", + "selected" : false + }, + "selected" : false + },{"data" : { + "id" : "id72cb0404", + "SUID" : "id72cb0404","BiopaxRef":"da3","LineThickness":1.0,"EndArrow":"Arrow","Coords":[{"x":490.0,"y":441.75},{"x":576.5,"y":477.0}],"GraphId":"id72cb0404","ZOrder":"12288","source":"e8257","target":"cee8f", "StartArrow" : "Line", + "selected" : false + }, + "selected" : false + },{"data" : { + "id" : "id67d6bee4", + "SUID" : "id67d6bee4","LineThickness":1.0,"EndArrow":"Arrow","Coords":[{"x":560.0,"y":551.5},{"x":576.5,"y":497.0}],"GraphId":"id67d6bee4","ZOrder":"12288","source":"b2ed9","target":"cee8f", "StartArrow" : "Line", + "selected" : false + }, + "selected" : false + },{"data" : { + "id" : "id2225e448", + "SUID" : "id2225e448","LineThickness":1.0,"EndArrow":"TBar","Coords":[{"x":612.75,"y":328.0},{"x":616.5,"y":477.0}],"GraphId":"id2225e448","ZOrder":"12288","source":"ea18f","target":"cee8f", "StartArrow" : "Line", + "selected" : false + }, + "selected" : false + },{"data" : { + "id" : "iddcf2b769", + "SUID" : "iddcf2b769","LineThickness":1.0,"EndArrow":"Arrow","Coords":[{"x":556.5,"y":487.0},{"x":306.0,"y":482.0}],"GraphId":"iddcf2b769","ZOrder":"12288","source":"cee8f","target":"a89bb", "StartArrow" : "Line", + "selected" : false + }, + "selected" : false + },{"data" : { + "id" : "id41ab3747", + "SUID" : "id41ab3747","LineThickness":1.0,"EndArrow":"Arrow","Coords":[{"x":869.2979221880635,"y":207.61711544577537},{"x":783.0,"y":68.0}],"GraphId":"id41ab3747","ZOrder":"12288","source":"bc0e8","target":"a3afb", "StartArrow" : "Line", + "selected" : false + }, + "selected" : false + },{"data" : { + "id" : "id8867bce2", + "SUID" : "id8867bce2","LineThickness":1.0,"EndArrow":"Arrow","Coords":[{"x":808.0,"y":660.0},{"x":871.0,"y":664.0}],"GraphId":"id8867bce2","ZOrder":"12288","source":"f145f","target":"bf8fe", "StartArrow" : "Line", + "selected" : false + }, + "selected" : false + },{"data" : { + "id" : "ide395a147", + "SUID" : "ide395a147","LineThickness":1.0,"EndArrow":"TBar","Coords":[{"x":690.0,"y":689.0},{"x":710.4890626138044,"y":688.9788778557383}],"GraphId":"ide395a147","ZOrder":"12288","target":"df593", "StartArrow" : "Line", + "selected" : false + }, + "selected" : false + },{"data" : { + "id" : "id8d06493a", + "SUID" : "id8d06493a","LineThickness":1.0,"EndArrow":"TBar","Coords":[{"x":869.0,"y":236.0},{"x":869.2979221880635,"y":207.61711544577537}],"GraphId":"id8d06493a","ZOrder":"12288","target":"bc0e8", "StartArrow" : "Line", + "selected" : false + }, + "selected" : false + },{"data" : { + "id" : "b9169", + "SUID" : "b9169","LineThickness":1.0,"EndArrow":"Arrow","Coords":[{"x":736.5,"y":478.0},{"x":869.2979221880635,"y":207.61711544577537}],"GraphId":"b9169","ZOrder":"12288","source":"cac78","target":"bc0e8", "StartArrow" : "Line", + "selected" : false + }, + "selected" : false + },{"data" : { + "id" : "d081a", + "SUID" : "d081a","BiopaxRef":"af2","LineThickness":1.0,"EndArrow":"Arrow","Coords":[{"x":671.5,"y":205.25},{"x":869.2979221880635,"y":207.61711544577537}],"GraphId":"d081a","ZOrder":"12288","source":"b1117","target":"bc0e8", "StartArrow" : "Line", + "selected" : false + }, + "selected" : false + },{"data" : { + "id" : "idf797ab33", + "SUID" : "idf797ab33","LineThickness":1.0,"EndArrow":"TBar","Coords":[{"x":957.0,"y":693.0},{"x":826.7527874664074,"y":691.4995443533489}],"GraphId":"idf797ab33","ZOrder":"12288","target":"c46f0", "StartArrow" : "Line", + "selected" : false + }, + "selected" : false + },{"data" : { + "id" : "idc8239132", + "SUID" : "idc8239132","LineThickness":1.0,"ConnectorType":"Elbow","Coords":[{"x":877.0,"y":487.0},{"x":842.0,"y":443.0},{"x":631.0,"y":399.0}],"GraphId":"idc8239132","ZOrder":"12288", "StartArrow" : "Line", + "selected" : false + }, + "selected" : false + },{"data" : { + "id" : "idb2a3006f", + "SUID" : "idb2a3006f","LineThickness":1.0,"LineStyle" : "Dashed","Coords":[{"x":170.0,"y":789.0},{"x":221.0,"y":789.0}],"GraphId":"idb2a3006f","ZOrder":"12288", "StartArrow" : "Line", + "selected" : false + }, + "selected" : false + },{"data" : { + "id" : "id28e07596", + "SUID" : "id28e07596","LineThickness":1.0,"LineStyle" : "Dashed","Coords":[{"x":614.0,"y":138.0},{"x":866.0,"y":139.0}],"GraphId":"id28e07596","ZOrder":"12288", "StartArrow" : "Line", + "selected" : false + }, + "selected" : false + },{"data" : { + "id" : "ide9adea14", + "SUID" : "ide9adea14","LineThickness":1.0,"LineStyle" : "Dashed","Coords":[{"x":869.0,"y":122.0},{"x":870.0,"y":159.0}],"GraphId":"ide9adea14","ZOrder":"12288", "StartArrow" : "Line", + "selected" : false + }, + "selected" : false + },{"data" : { + "id" : "id7efc9f41", + "SUID" : "id7efc9f41","LineThickness":1.0,"EndArrow":"Arrow","Coords":[{"x":869.2979221880635,"y":207.61711544577537},{"x":567.5,"y":295.0}],"GraphId":"id7efc9f41","ZOrder":"12288","source":"bc0e8", "StartArrow" : "Line", + "selected" : false + }, + "selected" : false + },{"data" : { + "id" : "id5c1c906a", + "SUID" : "id5c1c906a","LineThickness":1.0,"ConnectorType":"Elbow","Coords":[{"x":711.0829233169326,"y":790.2713608544345},{"x":690.0,"y":688.0}],"GraphId":"id5c1c906a","ZOrder":"12288","source":"a3831", "StartArrow" : "Line", + "selected" : false + }, + "selected" : false + },{"data" : { + "id" : "id8e42b9e5", + "SUID" : "id8e42b9e5","LineThickness":1.0,"Coords":[{"x":962.5,"y":334.0},{"x":957.0,"y":692.0}],"GraphId":"id8e42b9e5","ZOrder":"12288","source":"ab99e", "StartArrow" : "Line", + "selected" : false + }, + "selected" : false + },{"data" : { + "id" : "idd87a0f4b", + "SUID" : "idd87a0f4b","LineThickness":1.0,"ConnectorType":"Elbow","Coords":[{"x":899.5,"y":313.75},{"x":869.0,"y":275.375},{"x":869.0,"y":237.0}],"GraphId":"idd87a0f4b","ZOrder":"12288","source":"ab99e", "StartArrow" : "Line", + "selected" : false + }, + "selected" : false + },{"data" : { + "id" : "iddf680248", + "SUID" : "iddf680248","LineThickness":1.0,"EndArrow":"Arrow","Coords":[{"x":556.5,"y":487.0},{"x":436.0,"y":584.5}],"GraphId":"iddf680248","ZOrder":"12288","source":"cee8f", "StartArrow" : "Line", + "selected" : false + }, + "selected" : false + },{"data" : { + "id" : "id1784ab3d", + "SUID" : "id1784ab3d","LineThickness":1.0,"ConnectorType":"Elbow","Coords":[{"x":475.0,"y":205.25},{"x":298.0,"y":283.625},{"x":437.0,"y":362.0},{"x":576.0,"y":406.5},{"x":576.0,"y":451.0}],"GraphId":"id1784ab3d","ZOrder":"12288","source":"e2998", "StartArrow" : "Line", + "selected" : false + }, + "selected" : false + },{"data" : { + "id" : "id3e486e28", + "SUID" : "id3e486e28","LineThickness":1.0,"LineStyle" : "Dashed","Coords":[{"x":900.75,"y":118.75},{"x":868.0,"y":120.0}],"GraphId":"id3e486e28","ZOrder":"12288","source":"b6fd7", "StartArrow" : "Line", + "selected" : false + }, + "selected" : false + },{"data" : { + "id" : "id96d4e215", + "SUID" : "id96d4e215","LineThickness":1.0,"EndArrow":"TBar","Coords":[{"x":506.5,"y":244.75},{"x":444.0,"y":244.75}],"GraphId":"id96d4e215","ZOrder":"12288","source":"fbd89", "StartArrow" : "Line", + "selected" : false + }, + "selected" : false + },{"data" : { + "id" : "id2b489f88", + "SUID" : "id2b489f88","LineThickness":1.0,"EndArrow":"Arrow","Coords":[{"x":1030.5,"y":222.25},{"x":995.5,"y":223.0}],"GraphId":"id2b489f88","ZOrder":"12288","source":"d288f", "StartArrow" : "Line", + "selected" : false + }, + "selected" : false + },{"data" : { + "id" : "idd6fbd36", + "SUID" : "idd6fbd36","LineThickness":1.0,"LineStyle" : "Dashed","Coords":[{"x":612.75,"y":308.0},{"x":615.0,"y":132.0}],"GraphId":"idd6fbd36","ZOrder":"12288","source":"ea18f", "StartArrow" : "Line", + "selected" : false + }, + "selected" : false + },{"data" : { + "id" : "idad814d38", + "SUID" : "idad814d38","LineThickness":1.0,"EndArrow":"Arrow","Coords":[{"x":871.0,"y":736.5},{"x":822.5,"y":737.0}],"GraphId":"idad814d38","ZOrder":"12288","source":"e030c", "StartArrow" : "Line", + "selected" : false + }, + "selected" : false + }] + } +} diff --git a/style.css b/style.css new file mode 100644 index 0000000..8c774dd --- /dev/null +++ b/style.css @@ -0,0 +1,26 @@ +body { + font: 14px helvetica neue, helvetica, arial, sans-serif; +} + +#cy { + height: 100%; + width: 100%; + position: absolute; + left: 0; + /*top: 100px;*/ +} + +#info { + color: #c88; + font-size: 1em; + position: absolute; + z-index: -1; + left: 1em; + top: 1em; +} + +.thumb { + height: 75px; + border: 1px solid #000; + margin: 10px 5px 0 0; +} diff --git a/style.css~ b/style.css~ new file mode 100644 index 0000000..7e49280 --- /dev/null +++ b/style.css~ @@ -0,0 +1,20 @@ +body { + font: 14px helvetica neue, helvetica, arial, sans-serif; +} + +#cy { + height: 100%; + width: 100%; + position: absolute; + left: 0; + top: 0; +} + +#info { + color: #c88; + font-size: 1em; + position: absolute; + z-index: -1; + left: 1em; + top: 1em; +} \ No newline at end of file diff --git a/test b/test new file mode 100644 index 0000000..3011231 --- /dev/null +++ b/test @@ -0,0 +1,4 @@ +{ + "name": "Tham Hoang", + "family": "Vietnam" +} diff --git a/test~ b/test~ new file mode 100644 index 0000000..3011231 --- /dev/null +++ b/test~ @@ -0,0 +1,4 @@ +{ + "name": "Tham Hoang", + "family": "Vietnam" +}