From bddd3c0fdb049c50f767d3c1c98c9022c2a68736 Mon Sep 17 00:00:00 2001
From: ivanPozdnyakov <ivan.pozdnyakov@uconn.edu>
Date: Fri, 8 Jan 2016 14:54:09 -0500
Subject: [PATCH] new format for pathfinding, added to service array

---
 VQI_PathwayEditor.js |  7 +++++--
 score_json.txt       | 16 +++++++++++++++-
 2 files changed, 20 insertions(+), 3 deletions(-)

diff --git a/VQI_PathwayEditor.js b/VQI_PathwayEditor.js
index 4663f05..442f656 100755
--- a/VQI_PathwayEditor.js
+++ b/VQI_PathwayEditor.js
@@ -4,6 +4,9 @@ var VQI_PathwayEditor = function (parent) {
 //	var serverURL = "http://cardinal3.engr.uconn.edu/pathwayVisual/";
     var services = {};
 
+	/*Local Services*/
+	services["pathwayFinderUrl"] = "score_json.txt";
+	
     /* Yue's Local Server*/
     services['pathwayFinder'] = 'http://cardinal3.engr.uconn.edu/pathwayVisual/PathwayParser/ajaxJSON.php';
     services['pathwaySaver'] = 'http://cardinal3.engr.uconn.edu/pathwayVisual/PathwayParser/updateDB_json.php';
@@ -17,7 +20,7 @@ var VQI_PathwayEditor = function (parent) {
 
     /* BIBCI Server */
 //    services['pathwayFinder'] = 'http://bibci.engr.uconn.edu/yuz12012/pathwayVisual//PathwayParser/ajaxJSON.php';
-//    services['pathwaySaver'] = 'http://bibci.engr.uconn.edu/yuz12012/pathwayVisual//PathwayParser/updateDB_json.php';
+//   services['pathwaySaver'] = 'http://bibci.engr.uconn.edu/yuz12012/pathwayVisual//PathwayParser/updateDB_json.php';
 //    services['pathwayScorer'] = 'http://bibci.engr.uconn.edu/yuz12012/pathwayVisual/ScoreSystem/getScore.php';
 //    services['pathwayWeightedScorer'] = 'http://bibci.engr.uconn.edu/thh13003/pathway2/pathwayweightedscorer.php';
 //    services['objectFinder'] = 'http://bibci.engr.uconn.edu/thh13003/pathway2/qsys_json.php';
@@ -1159,7 +1162,7 @@ var VQI_PathwayEditor = function (parent) {
             var cy = $('#' + parent + '-cy').cytoscape('get');
             var sid = orderedSelectedNodes[0]._private.data['id'];
             var vid = orderedSelectedNodes[1]._private.data['id'];
-            $.post('score_json.txt', {
+            $.post(services['pathwayFinderUrl'], {
                 data_json: JSON.stringify(JSON.parse(states[states.length - 1]))
             }, function (yue_data) {
 				console.log(yue_data);
diff --git a/score_json.txt b/score_json.txt
index b0a3c6b..23645f7 100644
--- a/score_json.txt
+++ b/score_json.txt
@@ -10,4 +10,18 @@
         "mFDR": 0.00143,
         "lowp": 1,
         "consistent_lowp": 0
-    }]
\ No newline at end of file
+    },
+{
+        "edges": ["e0", "e2", "e8", "e9", "e11", "e15", "e78", "e87"],
+        "rscore": 0.47222,
+        "genes": ["BMP", "IGF"],
+        "source": "n0",
+        "destination": "n22",
+        "person": "X1728790",
+        "pathway": 342,
+        "mscore": 0,
+        "mFDR": 0.00143,
+        "lowp": 1,
+        "consistent_lowp": 0
+    }
+]
\ No newline at end of file