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#!/bin/bash
#SBATCH --mail-type=ALL # Mail events (NONE, BEGIN, END, FAIL, ALL)
#SBATCH --mail-user=jason.crutcher@uconn.edu # Your email address
#SBATCH --nodes=1 # OpenMP requires a single node
#SBATCH --ntasks=1 # Run a single serial task
#SBATCH --cpus-per-task=4
#SBATCH --mem=16gb
#SBATCH --time=24:00:00 # Time limit hh:mm:ss
#SBATCH -e error_%A_%a.log # Standard error
#SBATCH -o output_%A_%a.log # Standard output
#SBATCH --job-name=level1 # Descriptive job name
#SBATCH --partition=serial # Use a serial partition 24 cores/7days
##### END OF JOB DEFINITION #####
SUBJECT=$1
module load singularity
singularity run --cleanenv \
--bind /scratch/psyc5171/exercises/mbdata/bids:/data \
--bind /scratch/jac18015/hw5/fmriprep:/out \
/scratch/psyc5171/containers/fmriprep_1.5.9.sif \
--participant_label sub-01 \
--nthreads 4 --omp-nthreads 4 \
--fs-license-file /data/code/license.txt \
--cifti-output \
/data /out participant
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