setup_local_align.py

from distutils.core import setup
from distutils.extension import Extension
from Cython.Distutils import build_ext
import numpy as np

ext = [Extension("cython_local_align",sources=["cython_local_align.pyx"])]
setup(
	name="Cython Local Align",
	cmdclass={'build_ext':build_ext},
	include_dirs=[np.get_include()],
	ext_modules=ext
)