diff --git a/.gitignore b/.gitignore
index e15fc64..704add0 100644
--- a/.gitignore
+++ b/.gitignore
@@ -43,3 +43,7 @@ checkpoint.json
 checkpoint.json
 checkpoint.json
 *.txt
+output/embeddings/gene_based/gene_based_embeddings_part1.pt
+output/embeddings/gene_based/gene_based_embeddings_part0.pt
+output/embeddings/gene_based/gene_based_embeddings_part2.pt
+output/gene_based_preprocessed/processed_genes.json