reading-list.md

Reading List
============
|Paper|Tags|
|-----|----|
|Kunkel S, Schmidt M, Eppler JM, Plesser HE, Masumoto G, Igarashi J, Ishii S, Fukai T, Morrison A, Diesmann M and Helias M (2014) **Spiking network simulation code for petascale computers** *Front. Neuroinform.* 8:78. [doi: 10.3389/fninf.2014.00078](http://journal.frontiersin.org/Journal/10.3389/fninf.2014.00078/abstract)|Memory, Data Structures, MPI, K computer|
|Minkovich K, Thibeault C M, O'Brien M J, Nogin A (2014) **HRLSim: A high performance spiking neural network simulator for GPGPU clusters Neural Networks and Learning Systems**, *IEEE Transactions on  Neural Networks and Learning Systems* 25:316-331, [doi:10.1007/s00521-013-1408-9](http://dx.doi.org/10.1007/s00521-013-1408-9)|GPU, MPI|
|Diesmann M (2013) **The road to brain-scale simulations on K**, [*BioSupercomputing Newsletter* 8:8](http://www.csrp.riken.jp/BSNewsLetters/BSNvol8-1303/EN/report03.html)|K computer|
|Dinkelbach HU, Vitay J, Beuth F, Hamker FH (2012) **Comparison of GPU- and CPU-implementations of mean-firing rate neural networks on parallel hardware** [*Network* 23(4):212-236](http://www.ncbi.nlm.nih.gov/pubmed/23140422)|GPU|
|Kunkel S, Potjans TC, Eppler JM, Plesser HE, Morrison A and Diesmann M (2012) **Meeting the memory challenges of brain-scale network simulation** *Front. Neuroinform.* 5:35, [doi:10.3389/fninf.2011.00035](http://journal.frontiersin.org/Journal/10.3389/fninf.2011.00035/abstract)|Memory, Data Structures, MPI, IBM BlueGene|
|Kunkel S, Helias M, Potjans TC, Eppler JM, Plesser HE, Diesmann M, Morrison A (2012) **Memory Consumption of Neuronal Network Simulators at the Brain Scale** in *Binder K, Münster G, Kremer M (Eds) NIC Symposium 2012 Proceedings NIC Series* 45:81, Jülich, Germany, ISBN 978-3-89336-758-0 ([link](http://www.ncbi.nlm.nih.gov/pubmed/22291636))|Memory, MPI|
|Djurfeldt M, Lundqvist M, Johansson C, Rehn M, Ekeberg O, Lansner A (2008) **Brain-scale simulation of the neocortex on the IBM Blue Gene/L supercomputer** *IBM Journal of Research and Development* 52(1-2):31-42 ([link](http://ieeexplore.ieee.org/xpl/articleDetails.jsp?arnumber=5388638))|IBM BlueGene|
|Brette R, Rudolph M, Carnevale T, Hines M, Beeman D, Bower JM, Diesmann M, Morrison A, Goodman PH, Harris FC Jr, Zirpe M, Natschläger T, Pecevski D, Ermentrout B, Djurfeldt M, Lansner A, Rochel O, Vieville T, Muller E, Davison AP, El Boustani S, Destexhe A (2007) **Simulation of networks of spiking neurons: a review of tools and strategies** *J Comput Neurosci* 23(3):349-98 ([link](http://link.springer.com/article/10.1007%2Fs10827-007-0038-6))|Survey, Review|
|Eppler JM, Plesser HE, Morrison A, Diesmann M, Gewaltig MO (2007) **Multithreaded and distributed simulation of large biological neuronal networks** In: *Proc. of EuroPVM/MPI 2007, Springer LNCS* 4757:391-392 ([pdf](http://link.springer.com/content/pdf/10.1007%2F978-3-540-75416-9_55.pdf))|MPI, OpenMP|
|Plesser HE, Eppler JM, Morrison A, Diesmann M, Gewaltig MO (2007) **Efficient parallel simulation of large-scale neuronal networks on clusters of multiprocessor computers** In: *Proc. of Euro-Par Parallel Processing 2007, Springer LNCS* 4641:672-681 ([pdf](http://link.springer.com/content/pdf/10.1007%2F978-3-540-74466-5_71.pdf))|MPI, OpenMP|
|Morrison, A.; Mehring, C.; Geisel, T.; Aertsen, A. & Diesmann, M. (2005) **Advancing the boundaries of high connectivity network simulation with distributed computing.** *Neural computation* 17 : 1776-1801 ([pdf](http://www.mitpressjournals.org/doi/pdfplus/10.1162/0899766054026648))|MPI|
|Diesmann, M. & Gewaltig, M. (2002) **NEST: An Environment for Neural Systems Simulations.** In: *Plesser, T. & Macho, V. (ed.) Forschung und wisschenschaftliches Rechnen, Beiträge zum Heinz-Billing-Preis 2001*, 58 : 43-70 , Ges. für Wiss. Datenverarbeitung ([pdf](http://cns-classes.bu.edu/cn510/Papers/diesmann-gewaltig-02.pdf))||