From 36ffbc9bca404f8df2524dbfee5eba5b41da2a2a Mon Sep 17 00:00:00 2001 From: Suman Neupane Date: Sat, 22 Apr 2017 19:26:06 -0400 Subject: [PATCH] final script to compute log-likelihood of a topology under Jukes Cantor model --- tree_like.py | 17 ----------------- 1 file changed, 17 deletions(-) diff --git a/tree_like.py b/tree_like.py index 293f86b..9bf4ee5 100644 --- a/tree_like.py +++ b/tree_like.py @@ -205,23 +205,6 @@ def calcActualHeight(root): h += nd.edgelen return h -def getPostorder(nd, start = True): # how to travel across tree - global _postorder - if start: - _postorder = [] # start with an empty list - - - if nd.lchild: - getPostorder(nd.lchild, False) # recursive function to - _postorder.append(nd) - - if nd.rsib: - getPostorder(nd.rsib, False) - - - - return _postorder - def readnewick(tree): total_length = len(tree)