From fe48c23ba0869434b338f542c96257516724c4e6 Mon Sep 17 00:00:00 2001
From: Suman Neupane <suman.neupane@uconn.edu>
Date: Fri, 21 Apr 2017 20:30:11 -0400
Subject: [PATCH] simulates sequences for a given tree under Jukes Cantor model

---
 simSequences.py | 5 -----
 1 file changed, 5 deletions(-)

diff --git a/simSequences.py b/simSequences.py
index f753091..c66e68f 100644
--- a/simSequences.py
+++ b/simSequences.py
@@ -79,7 +79,6 @@ def simulateSequences(self, num_sites):
                        
         return self.states
 
-
     def __str__(self):
         # __str__ is a built-in function that is used by print to show an object
         descendants_as_string = ','.join(['%d' % d for d in self.descendants])
@@ -97,8 +96,6 @@ def __str__(self):
             parstr = '%d' % self.par.number
             
         return 'node: number=%d edgelen=%g lchild=%s rsib=%s parent=%s descendants=[%s]' % (self.number, self.edgelen, lchildstr, rsibstr, parstr, descendants_as_string)
-        
-
 
 
 def simulate2(preorder, ntax,  num_sites, out):
@@ -117,8 +114,6 @@ def simulate2(preorder, ntax,  num_sites, out):
     newf.write('end;')
 
 
-
-
 def readnewick(tree):
     total_length = len(tree)
     internal_node_number = -1