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# ErrorCorrection | |
Error Correction Algorithm for Biological Sequences | |
Please, compile the source code revised_ec.cpp with the following command using g++ compiler (gcc version 4.6.1 or above): | |
g++ -O3 revised_ec.cpp -o ec | |
The command will produce an executable file named ec. Please, run the following command to correct the reads: | |
./ec <input_file_name> <output_file_name> | |
Please, note that input file will be FASTA file where the format of the file should be: | |
>read_id | |
read_string | |
>read_id | |
read_string | |
. | |
. | |
. | |
The corrected reads will be placed in output_file as FASTA format. If you want to tune the parameters, please, find initialize_parameters() function block at | |
the beginning of the source code and change the parameters accordingly. | |