Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
Browse files
Browse the repository at this point in the history
Create Contig.java
- Loading branch information
Showing
1 changed file
with
63 additions
and
0 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Original file line | Diff line number | Diff line change |
---|---|---|---|
@@ -0,0 +1,63 @@ | |||
import java.util.List; | |||
|
|||
public class Contig implements Comparable { | |||
|
|||
private int contigId; | |||
private List<Double> fragmentSizeList; | |||
private double matchedScore; | |||
private int startingPosition; | |||
private int endingPosition; | |||
|
|||
public int getStartingPosition() { | |||
return startingPosition; | |||
} | |||
|
|||
public void setStartingPosition(int startingPosition) { | |||
this.startingPosition = startingPosition; | |||
} | |||
|
|||
public int getEndingPosition() { | |||
return endingPosition; | |||
} | |||
|
|||
public void setEndingPosition(int endingPosition) { | |||
this.endingPosition = endingPosition; | |||
} | |||
|
|||
public int getContigId() { | |||
return contigId; | |||
} | |||
|
|||
public void setContigId(int contigId) { | |||
this.contigId = contigId; | |||
} | |||
|
|||
public List<Double> getFragmentSizeList() { | |||
return fragmentSizeList; | |||
} | |||
|
|||
public void setFragmentSizeList(List<Double> fragmentSizeList) { | |||
this.fragmentSizeList = fragmentSizeList; | |||
} | |||
|
|||
public double getMatchedScore() { | |||
return matchedScore; | |||
} | |||
|
|||
public void setMatchedScore(double matchedScore) { | |||
this.matchedScore = matchedScore; | |||
} | |||
|
|||
public int compareTo(Object obj) { | |||
Contig tmp = (Contig) obj; | |||
if ((this.matchedScore) < (tmp.matchedScore)) { | |||
/* instance lt received */ | |||
return -1; | |||
} else if ((this.matchedScore) > (tmp.matchedScore)) { | |||
/* instance gt received */ | |||
return 1; | |||
} | |||
/* instance == received */ | |||
return 0; | |||
} | |||
} |