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| (1) INDEX FOLDER PATH | ||
| /home/sus11005/Data/CODE/SPLICED/DATA/NEW/MAIN_INDEX/chr | ||
| (2) MAP FILE PATH | ||
| /home/sus11005/Data/CODE/SPLICED/DATA/NEW/MAP/map_50.sam | ||
| (3) UMRQ FILE PATH | ||
| /home/sus11005/Data/CODE/SPLICED/DATA/NEW/MAP/umrs_50.fq | ||
| (4) UMRS FILE PATH | ||
| /home/sus11005/Data/CODE/SPLICED/DATA/NEW/MAP/umrs_50.fa | ||
| (5) READS FILE PATH | ||
| /home/sus11005/Data/CODE/SPLICED/DATA/NEW/READS/50.1.fastq | ||
| (6) COVERAGE FILE PATH | ||
| /home/sus11005/Data/CODE/SPLICED/DATA/NEW/MAP/coverage_50.cov | ||
| (7) NUMBER OF MISMATHES FOR FULL ALIGBMENT | ||
| 2 | ||
| (8) NUMBER OF MISMATCHES FOR GAPPED ALIGNMENT | ||
| 1 | ||
| (9) MAX NUMBER OF ALIGNMENT | ||
| 100 | ||
| (10) NUMBER OF THREADS TO BE USED BY BOWTIE | ||
| 10 | ||
| (11) LENGTH OF CONSENSUS | ||
| 108 | ||
| (12) NAME OF THE SEQUENCE | ||
| chr1 | ||
| (13) PRE-PROCESS | ||
| off | ||
| (14) HAMMING DISTANCE THRESHOLD | ||
| 1.2 | ||
| (15) SEARCH SPACE LENGTH | ||
| 60000 | ||
| (16) MAX RELATIVE ALIGNMENT | ||
| 10 | ||
| (17) SEQUENCE FILE FOLDER | ||
| /home/sus11005/Data/CODE/ERGC/TAR/HG19/ | ||
| (18) OVERLAP LENGTH | ||
| 48 | ||
| (19) OVERLAP HAMMING DISTANCE | ||
| 2 | ||
| (20) NUMBER OF THREADS TO BE USED BY POMP | ||
| 1 | ||
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