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Create properties.prop

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sus11005 committed Sep 28, 2016
1 parent 9029fd3 commit 297c48916668d81313a18199a332015838e02c2d
Showing with 41 additions and 0 deletions.
  1. +41 −0 POMP-DETECT/properties.prop
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(1) INDEX FOLDER PATH
/home/sus11005/Data/CODE/SPLICED/DATA/NEW/MAIN_INDEX/chr
(2) MAP FILE PATH
/home/sus11005/Data/CODE/SPLICED/DATA/NEW/MAP/map_50.sam
(3) UMRQ FILE PATH
/home/sus11005/Data/CODE/SPLICED/DATA/NEW/MAP/umrs_50.fq
(4) UMRS FILE PATH
/home/sus11005/Data/CODE/SPLICED/DATA/NEW/MAP/umrs_50.fa
(5) READS FILE PATH
/home/sus11005/Data/CODE/SPLICED/DATA/NEW/READS/50.1.fastq
(6) COVERAGE FILE PATH
/home/sus11005/Data/CODE/SPLICED/DATA/NEW/MAP/coverage_50.cov
(7) NUMBER OF MISMATHES FOR FULL ALIGBMENT
2
(8) NUMBER OF MISMATCHES FOR GAPPED ALIGNMENT
1
(9) MAX NUMBER OF ALIGNMENT
100
(10) NUMBER OF THREADS TO BE USED BY BOWTIE
10
(11) LENGTH OF CONSENSUS
108
(12) NAME OF THE SEQUENCE
chr1
(13) PRE-PROCESS
off
(14) HAMMING DISTANCE THRESHOLD
1.2
(15) SEARCH SPACE LENGTH
60000
(16) MAX RELATIVE ALIGNMENT
10
(17) SEQUENCE FILE FOLDER
/home/sus11005/Data/CODE/ERGC/TAR/HG19/
(18) OVERLAP LENGTH
48
(19) OVERLAP HAMMING DISTANCE
2
(20) NUMBER OF THREADS TO BE USED BY POMP
1

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