diff --git a/POMP-DETECT/properties.prop b/POMP-DETECT/properties.prop new file mode 100644 index 0000000..b733eb6 --- /dev/null +++ b/POMP-DETECT/properties.prop @@ -0,0 +1,41 @@ +(1) INDEX FOLDER PATH +/home/sus11005/Data/CODE/SPLICED/DATA/NEW/MAIN_INDEX/chr +(2) MAP FILE PATH +/home/sus11005/Data/CODE/SPLICED/DATA/NEW/MAP/map_50.sam +(3) UMRQ FILE PATH +/home/sus11005/Data/CODE/SPLICED/DATA/NEW/MAP/umrs_50.fq +(4) UMRS FILE PATH +/home/sus11005/Data/CODE/SPLICED/DATA/NEW/MAP/umrs_50.fa +(5) READS FILE PATH +/home/sus11005/Data/CODE/SPLICED/DATA/NEW/READS/50.1.fastq +(6) COVERAGE FILE PATH +/home/sus11005/Data/CODE/SPLICED/DATA/NEW/MAP/coverage_50.cov +(7) NUMBER OF MISMATHES FOR FULL ALIGBMENT +2 +(8) NUMBER OF MISMATCHES FOR GAPPED ALIGNMENT +1 +(9) MAX NUMBER OF ALIGNMENT +100 +(10) NUMBER OF THREADS TO BE USED BY BOWTIE +10 +(11) LENGTH OF CONSENSUS +108 +(12) NAME OF THE SEQUENCE +chr1 +(13) PRE-PROCESS +off +(14) HAMMING DISTANCE THRESHOLD +1.2 +(15) SEARCH SPACE LENGTH +60000 +(16) MAX RELATIVE ALIGNMENT +10 +(17) SEQUENCE FILE FOLDER +/home/sus11005/Data/CODE/ERGC/TAR/HG19/ +(18) OVERLAP LENGTH +48 +(19) OVERLAP HAMMING DISTANCE +2 +(20) NUMBER OF THREADS TO BE USED BY POMP +1 +