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Welcome to Open Source World, BAby!
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# sometimes I temporarily install some packages to ~/R-tmp; normall I install to ~/R | |||
R_LIBS_USER="~/R:~/R-tmp:~/R-bioc" | |||
|
|||
# custom knitr options for me | |||
R_KNITR_OPTIONS="knitr.chunk.tidy=TRUE" | |||
|
|||
#_R_CHECK_CRAN_INCOMING_=FALSE | |||
# do not force installing packages in Suggests | |||
_R_CHECK_FORCE_SUGGESTS_=false | |||
|
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options( | |||
repos = c(CRAN = 'https://cran.rstudio.com'), | |||
help_type = 'text', width = 80, github.user = 'yihui', shiny.reactlog = TRUE, | |||
devtools.name = 'Yihui Xie', devtools.desc.author = 'Yihui Xie <xie@yihui.name>', | |||
devtools.desc.license = 'GPL', | |||
warnPartialMatchAttr = TRUE, warnPartialMatchDollar = TRUE | |||
) | |||
|
|||
if (.Platform$OS.type == 'unix') { | |||
options(browser = 'google-chrome') | |||
} | |||
|
|||
if (interactive()) { | |||
d = list( | |||
h = function(pkg) help(package = (pkg), help_type = 'html'), | |||
i = function(...) devtools::install_github(...), | |||
r = function() { | |||
d1 = grep('^/usr/', .libPaths(), value = TRUE) | |||
d2 = setdiff(.libPaths(), d1) | |||
p1 = .packages(TRUE, d1) | |||
p2 = .packages(TRUE, d2) | |||
for (i in intersect(p1, p2)) { | |||
message('Removing ', i) | |||
remove.packages(i) | |||
} | |||
} | |||
) | |||
} |
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alias R='R --no-save -q' | |||
alias sasdesk='rdesktop -u xie -d IASTATE sas.stat.iastate.edu' | |||
alias Rbatch='R CMD BATCH --no-restore --no-save --no-timing' | |||
alias aptup='sudo apt-get update; sudo apt-get upgrade' | |||
alias aptrm='sudo apt-get autoremove; sudo apt-get autoclean' | |||
|
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GREP_OPTIONS="--exclude-dir=\.svn --exclude-dir=\.Rproj\.user --exclude-dir=\.git" | |||
export GREP_OPTIONS |
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<?xml version="1.0" encoding="UTF-8"?> | |||
<buildpath> | |||
<buildpathentry kind="src" path="src"/> | |||
<buildpathentry kind="con" path="org.eclipse.dltk.launching.INTERPRETER_CONTAINER"/> | |||
</buildpath> |
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<?xml version="1.0" encoding="UTF-8" standalone="no"?> | |||
<?fileVersion 4.0.0?> | |||
|
|||
<cproject> | |||
<storageModule moduleId="org.eclipse.cdt.core.settings"> | |||
<cconfiguration id="preference.org.eclipse.cdt.managedbuilder.core.configurationDataProvider.1510318341"> | |||
<storageModule moduleId="cdtBuildSystem" version="4.0.0"> | |||
<configuration artifactName="luci" buildProperties="" description="" id="preference.org.eclipse.cdt.managedbuilder.core.configurationDataProvider.1510318341" name="Preference Configuration" parent="org.eclipse.cdt.build.core.prefbase.cfg"> | |||
<folderInfo id="preference.org.eclipse.cdt.managedbuilder.core.configurationDataProvider.1510318341." name="/" resourcePath=""> | |||
<toolChain id="org.eclipse.cdt.build.core.prefbase.toolchain.407447051" name="No ToolChain" resourceTypeBasedDiscovery="false" superClass="org.eclipse.cdt.build.core.prefbase.toolchain"> | |||
<targetPlatform id="org.eclipse.cdt.build.core.prefbase.toolchain.407447051.1470931541" name=""/> | |||
<builder id="org.eclipse.cdt.build.core.settings.default.builder.823611263" keepEnvironmentInBuildfile="false" name="Gnu Make Builder" superClass="org.eclipse.cdt.build.core.settings.default.builder"/> | |||
<tool id="org.eclipse.cdt.build.core.settings.holder.libs.1685234798" name="holder for library settings" superClass="org.eclipse.cdt.build.core.settings.holder.libs"/> | |||
<tool id="org.eclipse.cdt.build.core.settings.holder.570824141" name="Assembly" superClass="org.eclipse.cdt.build.core.settings.holder"> | |||
<option id="org.eclipse.cdt.build.core.settings.holder.incpaths.491129717" name="Include Paths" superClass="org.eclipse.cdt.build.core.settings.holder.incpaths" valueType="includePath"> | |||
<listOptionValue builtIn="false" value="/usr/include/lua5.1"/> | |||
<listOptionValue builtIn="false" value="/usr/include"/> | |||
</option> | |||
<inputType id="org.eclipse.cdt.build.core.settings.holder.inType.858094059" languageId="org.eclipse.cdt.core.assembly" languageName="Assembly" sourceContentType="org.eclipse.cdt.core.asmSource" superClass="org.eclipse.cdt.build.core.settings.holder.inType"/> | |||
</tool> | |||
<tool id="org.eclipse.cdt.build.core.settings.holder.344617955" name="GNU C++" superClass="org.eclipse.cdt.build.core.settings.holder"> | |||
<option id="org.eclipse.cdt.build.core.settings.holder.incpaths.564526987" name="Include Paths" superClass="org.eclipse.cdt.build.core.settings.holder.incpaths" valueType="includePath"> | |||
<listOptionValue builtIn="false" value="/usr/include/lua5.1"/> | |||
<listOptionValue builtIn="false" value="/usr/include"/> | |||
</option> | |||
<inputType id="org.eclipse.cdt.build.core.settings.holder.inType.1426860237" languageId="org.eclipse.cdt.core.g++" languageName="GNU C++" sourceContentType="org.eclipse.cdt.core.cxxSource,org.eclipse.cdt.core.cxxHeader" superClass="org.eclipse.cdt.build.core.settings.holder.inType"/> | |||
</tool> | |||
<tool id="org.eclipse.cdt.build.core.settings.holder.869454750" name="GNU C" superClass="org.eclipse.cdt.build.core.settings.holder"> | |||
<option id="org.eclipse.cdt.build.core.settings.holder.incpaths.838425449" name="Include Paths" superClass="org.eclipse.cdt.build.core.settings.holder.incpaths" valueType="includePath"> | |||
<listOptionValue builtIn="false" value="/usr/include/lua5.1"/> | |||
<listOptionValue builtIn="false" value="/usr/include"/> | |||
</option> | |||
<inputType id="org.eclipse.cdt.build.core.settings.holder.inType.1755775295" languageId="org.eclipse.cdt.core.gcc" languageName="GNU C" sourceContentType="org.eclipse.cdt.core.cSource,org.eclipse.cdt.core.cHeader" superClass="org.eclipse.cdt.build.core.settings.holder.inType"/> | |||
</tool> | |||
</toolChain> | |||
</folderInfo> | |||
</configuration> | |||
</storageModule> | |||
<storageModule buildSystemId="org.eclipse.cdt.managedbuilder.core.configurationDataProvider" id="preference.org.eclipse.cdt.managedbuilder.core.configurationDataProvider.1510318341" moduleId="org.eclipse.cdt.core.settings" name="Preference Configuration"> | |||
<externalSettings/> | |||
<extensions> | |||
<extension id="org.eclipse.cdt.core.VCErrorParser" point="org.eclipse.cdt.core.ErrorParser"/> | |||
<extension id="org.eclipse.cdt.core.MakeErrorParser" point="org.eclipse.cdt.core.ErrorParser"/> | |||
<extension id="org.eclipse.cdt.core.GCCErrorParser" point="org.eclipse.cdt.core.ErrorParser"/> | |||
<extension id="org.eclipse.cdt.core.GASErrorParser" point="org.eclipse.cdt.core.ErrorParser"/> | |||
<extension id="org.eclipse.cdt.core.GLDErrorParser" point="org.eclipse.cdt.core.ErrorParser"/> | |||
</extensions> | |||
</storageModule> | |||
<storageModule moduleId="org.eclipse.cdt.core.externalSettings"/> | |||
<storageModule moduleId="scannerConfiguration"> | |||
<autodiscovery enabled="true" problemReportingEnabled="true" selectedProfileId="org.eclipse.cdt.make.core.GCCStandardMakePerProjectProfile"/> | |||
<profile id="org.eclipse.cdt.make.core.GCCStandardMakePerProjectProfile"> | |||
<buildOutputProvider> | |||
<openAction enabled="true" filePath=""/> | |||
<parser enabled="true"/> | |||
</buildOutputProvider> | |||
<scannerInfoProvider id="specsFile"> | |||
<runAction arguments="-E -P -v -dD ${plugin_state_location}/${specs_file}" command="gcc" useDefault="true"/> | |||
<parser enabled="true"/> | |||
</scannerInfoProvider> | |||
</profile> | |||
<profile id="org.eclipse.cdt.make.core.GCCStandardMakePerFileProfile"> | |||
<buildOutputProvider> | |||
<openAction enabled="true" filePath=""/> | |||
<parser enabled="true"/> | |||
</buildOutputProvider> | |||
<scannerInfoProvider id="makefileGenerator"> | |||
<runAction arguments="-f ${project_name}_scd.mk" command="make" useDefault="true"/> | |||
<parser enabled="true"/> | |||
</scannerInfoProvider> | |||
</profile> | |||
<profile id="org.eclipse.cdt.managedbuilder.core.GCCManagedMakePerProjectProfile"> | |||
<buildOutputProvider> | |||
<openAction enabled="true" filePath=""/> | |||
<parser enabled="true"/> | |||
</buildOutputProvider> | |||
<scannerInfoProvider id="specsFile"> | |||
<runAction arguments="-E -P -v -dD ${plugin_state_location}/${specs_file}" command="gcc" useDefault="true"/> | |||
<parser enabled="true"/> | |||
</scannerInfoProvider> | |||
</profile> | |||
<profile id="org.eclipse.cdt.managedbuilder.core.GCCManagedMakePerProjectProfileCPP"> | |||
<buildOutputProvider> | |||
<openAction enabled="true" filePath=""/> | |||
<parser enabled="true"/> | |||
</buildOutputProvider> | |||
<scannerInfoProvider id="specsFile"> | |||
<runAction arguments="-E -P -v -dD ${plugin_state_location}/specs.cpp" command="g++" useDefault="true"/> | |||
<parser enabled="true"/> | |||
</scannerInfoProvider> | |||
</profile> | |||
<profile id="org.eclipse.cdt.managedbuilder.core.GCCManagedMakePerProjectProfileC"> | |||
<buildOutputProvider> | |||
<openAction enabled="true" filePath=""/> | |||
<parser enabled="true"/> | |||
</buildOutputProvider> | |||
<scannerInfoProvider id="specsFile"> | |||
<runAction arguments="-E -P -v -dD ${plugin_state_location}/specs.c" command="gcc" useDefault="true"/> | |||
<parser enabled="true"/> | |||
</scannerInfoProvider> | |||
</profile> | |||
<profile id="org.eclipse.cdt.managedbuilder.core.GCCWinManagedMakePerProjectProfile"> | |||
<buildOutputProvider> | |||
<openAction enabled="true" filePath=""/> | |||
<parser enabled="true"/> | |||
</buildOutputProvider> | |||
<scannerInfoProvider id="specsFile"> | |||
<runAction arguments="-E -P -v -dD ${plugin_state_location}/${specs_file}" command="gcc" useDefault="true"/> | |||
<parser enabled="true"/> | |||
</scannerInfoProvider> | |||
</profile> | |||
<profile id="org.eclipse.cdt.managedbuilder.core.GCCWinManagedMakePerProjectProfileCPP"> | |||
<buildOutputProvider> | |||
<openAction enabled="true" filePath=""/> | |||
<parser enabled="true"/> | |||
</buildOutputProvider> | |||
<scannerInfoProvider id="specsFile"> | |||
<runAction arguments="-E -P -v -dD ${plugin_state_location}/specs.cpp" command="g++" useDefault="true"/> | |||
<parser enabled="true"/> | |||
</scannerInfoProvider> | |||
</profile> | |||
<profile id="org.eclipse.cdt.managedbuilder.core.GCCWinManagedMakePerProjectProfileC"> | |||
<buildOutputProvider> | |||
<openAction enabled="true" filePath=""/> | |||
<parser enabled="true"/> | |||
</buildOutputProvider> | |||
<scannerInfoProvider id="specsFile"> | |||
<runAction arguments="-E -P -v -dD ${plugin_state_location}/specs.c" command="gcc" useDefault="true"/> | |||
<parser enabled="true"/> | |||
</scannerInfoProvider> | |||
</profile> | |||
<scannerConfigBuildInfo instanceId="preference.org.eclipse.cdt.managedbuilder.core.configurationDataProvider.1510318341"> | |||
<autodiscovery enabled="true" problemReportingEnabled="true" selectedProfileId="org.eclipse.cdt.make.core.GCCStandardMakePerProjectProfile"/> | |||
<profile id="org.eclipse.cdt.make.core.GCCStandardMakePerProjectProfile"> | |||
<buildOutputProvider> | |||
<openAction enabled="true" filePath=""/> | |||
<parser enabled="true"/> | |||
</buildOutputProvider> | |||
<scannerInfoProvider id="specsFile"> | |||
<runAction arguments="-E -P -v -dD ${plugin_state_location}/${specs_file}" command="gcc" useDefault="true"/> | |||
<parser enabled="true"/> | |||
</scannerInfoProvider> | |||
</profile> | |||
<profile id="org.eclipse.cdt.make.core.GCCStandardMakePerFileProfile"> | |||
<buildOutputProvider> | |||
<openAction enabled="true" filePath=""/> | |||
<parser enabled="true"/> | |||
</buildOutputProvider> | |||
<scannerInfoProvider id="makefileGenerator"> | |||
<runAction arguments="-f ${project_name}_scd.mk" command="make" useDefault="true"/> | |||
<parser enabled="true"/> | |||
</scannerInfoProvider> | |||
</profile> | |||
<profile id="org.eclipse.cdt.managedbuilder.core.GCCManagedMakePerProjectProfile"> | |||
<buildOutputProvider> | |||
<openAction enabled="true" filePath=""/> | |||
<parser enabled="true"/> | |||
</buildOutputProvider> | |||
<scannerInfoProvider id="specsFile"> | |||
<runAction arguments="-E -P -v -dD ${plugin_state_location}/${specs_file}" command="gcc" useDefault="true"/> | |||
<parser enabled="true"/> | |||
</scannerInfoProvider> | |||
</profile> | |||
<profile id="org.eclipse.cdt.managedbuilder.core.GCCManagedMakePerProjectProfileCPP"> | |||
<buildOutputProvider> | |||
<openAction enabled="true" filePath=""/> | |||
<parser enabled="true"/> | |||
</buildOutputProvider> | |||
<scannerInfoProvider id="specsFile"> | |||
<runAction arguments="-E -P -v -dD ${plugin_state_location}/specs.cpp" command="g++" useDefault="true"/> | |||
<parser enabled="true"/> | |||
</scannerInfoProvider> | |||
</profile> | |||
<profile id="org.eclipse.cdt.managedbuilder.core.GCCManagedMakePerProjectProfileC"> | |||
<buildOutputProvider> | |||
<openAction enabled="true" filePath=""/> | |||
<parser enabled="true"/> | |||
</buildOutputProvider> | |||
<scannerInfoProvider id="specsFile"> | |||
<runAction arguments="-E -P -v -dD ${plugin_state_location}/specs.c" command="gcc" useDefault="true"/> | |||
<parser enabled="true"/> | |||
</scannerInfoProvider> | |||
</profile> | |||
<profile id="org.eclipse.cdt.managedbuilder.core.GCCWinManagedMakePerProjectProfile"> | |||
<buildOutputProvider> | |||
<openAction enabled="true" filePath=""/> | |||
<parser enabled="true"/> | |||
</buildOutputProvider> | |||
<scannerInfoProvider id="specsFile"> | |||
<runAction arguments="-E -P -v -dD ${plugin_state_location}/${specs_file}" command="gcc" useDefault="true"/> | |||
<parser enabled="true"/> | |||
</scannerInfoProvider> | |||
</profile> | |||
<profile id="org.eclipse.cdt.managedbuilder.core.GCCWinManagedMakePerProjectProfileCPP"> | |||
<buildOutputProvider> | |||
<openAction enabled="true" filePath=""/> | |||
<parser enabled="true"/> | |||
</buildOutputProvider> | |||
<scannerInfoProvider id="specsFile"> | |||
<runAction arguments="-E -P -v -dD ${plugin_state_location}/specs.cpp" command="g++" useDefault="true"/> | |||
<parser enabled="true"/> | |||
</scannerInfoProvider> | |||
</profile> | |||
<profile id="org.eclipse.cdt.managedbuilder.core.GCCWinManagedMakePerProjectProfileC"> | |||
<buildOutputProvider> | |||
<openAction enabled="true" filePath=""/> | |||
<parser enabled="true"/> | |||
</buildOutputProvider> | |||
<scannerInfoProvider id="specsFile"> | |||
<runAction arguments="-E -P -v -dD ${plugin_state_location}/specs.c" command="gcc" useDefault="true"/> | |||
<parser enabled="true"/> | |||
</scannerInfoProvider> | |||
</profile> | |||
</scannerConfigBuildInfo> | |||
</storageModule> | |||
</cconfiguration> | |||
</storageModule> | |||
<storageModule moduleId="cdtBuildSystem" version="4.0.0"> | |||
<project id="luci.null.949486034" name="luci"/> | |||
</storageModule> | |||
</cproject> |
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(custom-set-variables | |||
;; custom-set-variables was added by Custom. | |||
;; If you edit it by hand, you could mess it up, so be careful. | |||
;; Your init file should contain only one such instance. | |||
;; If there is more than one, they won't work right. | |||
'(column-number-mode t) | |||
'(ess-ask-for-ess-directory nil) | |||
'(ess-history-file nil) | |||
'(ess-language "R") | |||
'(ess-roxy-template-alist (list (cons "description" "") (cons "details" "") (cons "param" "") (cons "return" "") (cons "author" "Yihui Xie <\\url{http://yihui.name}>") (cons "examples" ""))) | |||
'(ess-user-full-name "Yihui Xie <\\url{http://yihui.name}>") | |||
'(inferior-R-args "--no-save") | |||
'(inferior-R-program-name "R") | |||
'(inhibit-startup-screen t) | |||
'(make-backup-files nil) | |||
'(scroll-bar-mode (quote right)) | |||
'(x-select-enable-clipboard t)) | |||
;;; ESS | |||
(add-hook 'ess-mode-hook | |||
(lambda () | |||
(ess-set-style 'C++ 'quiet) | |||
;; Because | |||
;; DEF GNU BSD K&R C++ | |||
;; ess-indent-level 2 2 8 5 4 | |||
;; ess-continued-statement-offset 2 2 8 5 4 | |||
;; ess-brace-offset 0 0 -8 -5 -4 | |||
;; ess-arg-function-offset 2 4 0 0 0 | |||
;; ess-expression-offset 4 2 8 5 4 | |||
;; ess-else-offset 0 0 0 0 0 | |||
;; ess-close-brace-offset 0 0 0 0 0 | |||
(add-hook 'local-write-file-hooks | |||
(lambda () | |||
(ess-nuke-trailing-whitespace))))) | |||
;; (setq ess-nuke-trailing-whitespace-p 'ask) | |||
;; or even | |||
(setq ess-nuke-trailing-whitespace-p t) | |||
;;; Perl | |||
(add-hook 'perl-mode-hook | |||
(lambda () (setq perl-indent-level 4))) | |||
(ess-toggle-underscore nil) | |||
(custom-set-faces | |||
;; custom-set-faces was added by Custom. | |||
;; If you edit it by hand, you could mess it up, so be careful. | |||
;; Your init file should contain only one such instance. | |||
;; If there is more than one, they won't work right. | |||
'(default ((t (:inherit nil :stipple nil :background "white" :foreground "black" :inverse-video nil :box nil :strike-through nil :overline nil :underline nil :slant normal :weight normal :height 87 :width normal :foundry "unknown" :family "DejaVu Sans Mono"))))) | |||
(show-paren-mode t) |
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[user] | |||
email = xie@yihui.name | |||
name = Yihui Xie | |||
[alias] | |||
co = checkout | |||
br = branch | |||
cp = cherry-pick | |||
[gui] | |||
fontui = -family Cantarell -size 10 -weight normal -slant roman -underline 0 -overstrike 0 | |||
fontdiff = -family \"Courier 10 Pitch\" -size 9 -weight normal -slant roman -underline 0 -overstrike 0 | |||
[branch "master"] | |||
rebase = true | |||
[branch] | |||
autosetuprebase = always |
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dist/ | |||
/host | |||
*.o | |||
*.so | |||
*.swp | |||
*.po~ | |||
/docs | |||
modules/luci-base/src/po2lmo |
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machine win-builder.r-project.org | |||
login anonymous | |||
password foo@bar.com |
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