MAINT: Move CellProfiler-Analyst launcher into main Makefile

Makefile

@@ -8,6 +8,7 @@
 
 # Overwritable paths to executables
 CELLPROFILER := cellprofiler
+CELLPROFILERANALYST := cellprofiler-analyst
 PARALLEL := parallel --eta
 PYTHON := python
 RSCRIPT := Rscript
@@ -35,6 +36,10 @@ SOURCES_cellprofiler_headless := $(TARGETS_cellprofiler_commands)
 TARGETS_cellprofiler_db := results/cellprofiler/rnai-screen-tf.db
 TARGETS_cellprofiler_prop := $(TARGETS_cellprofiler_db:.db=.properties)
 TARGETS_cellprofiler := $(TARGETS_cellprofiler_db) $(TARGETS_cellprofiler_prop)
+SOURCES_cellprofileranalyst_patch := $(TARGETS_cellprofiler_prop)
+TARGETS_cellprofileranalyst_patch :=					\
+	$(SOURCES_cellprofileranalyst_patch:.properties=_patched.properties)
+SOURCES_cellprofileranalyst := $(TARGETS_cellprofileranalyst_patch)
 define CELLPROFILER_OPTS_COMMON
 --file-list=$(SOURCES_cellprofiler_filelist) \
 --output-directory=$(dir $(TARGETS_cellprofiler_db))
@@ -101,10 +106,18 @@ $(TARGETS_cellprofiler_commands) : $(SOURCES_cellprofiler_commands)
 $(TARGETS_cellprofiler_batch) : $(SOURCES_cellprofiler)
 	$(CELLPROFILER) $(CELLPROFILER_OPTS_BATCH)
 
-.PHONY : gui-cellprofiler
-gui-cellprofiler : $(SOURCES_cellprofiler) ## Interactively run CellProfiler.
+.PHONY : gui-cp
+gui-cp : $(SOURCES_cellprofiler) ## Interactively run CellProfiler.
 	$(CELLPROFILER) $(CELLPROFILER_OPTS_GUI)
 
+.PHONY : gui-cpa
+gui-cpa : $(SOURCES_cellprofileranalyst) ## Interactively run CellProfiler Analyst.
+	cd $(<D); $(CELLPROFILERANALYST) $(<F)
+
+$(TARGETS_cellprofileranalyst_patch) : $(SOURCES_cellprofileranalyst_patch)
+	@echo "Removing database path"
+	sed -E 's#^(db_sqlite_file[[:space:]]+=[[:space:]]).*/([^/]+)$$#\1\2#' $< > $@
+
 $(TARGETS_img_filelist) : $(abspath $(SOURCES_img_filelist))
 	find $< -type f | sort > $@