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Updated user manual.
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ajt986 committed Jul 7, 2018
1 parent 9d20aec commit c1a081f
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Showing 4 changed files with 2 additions and 2 deletions.
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4 changes: 2 additions & 2 deletions src/edu/uconn/tripoint/triangulation/Triangulation.java
Expand Up @@ -418,7 +418,6 @@ public class Triangulation {
}

for(int i = 0; i < genes.length; i++){
int numnoncoding = noncoding.get(genes[i].getGene()).size();
for(Iterator<Pathway> it = _genepathways.get(genes[i].getGene()).iterator(); it.hasNext();){
Pathway curpath = it.next();
String pathwayid = curpath.getId();
Expand All @@ -436,6 +435,7 @@ public class Triangulation {
tri = getNormScore(consistencyscore, connparam)+getNormScore(impactscore, impnparam);
}
if(noncoding != null && noncoding.size() > 0){
int numnoncoding = noncoding.get(genes[i].getGene()).size();
if(numnoncoding == 0){
tri = 0;
}
Expand Down Expand Up @@ -505,7 +505,6 @@ public class Triangulation {
}

for(int i = 0; i < genes.length; i++){
int numnoncoding = noncoding.get(genes[i].getGene()).size();
for(Iterator<Pathway> it = _genepathways.get(genes[i].getGene()).iterator(); it.hasNext();){
Pathway curpath = it.next();
String pathwayid = curpath.getId();
Expand All @@ -523,6 +522,7 @@ public class Triangulation {
tri = getNormScore(consistencyscore, connparam)+getNormScore(impactscore, impnparam);
}
if(noncoding != null && noncoding.size() > 0){
int numnoncoding = noncoding.get(genes[i].getGene()).size();
if(numnoncoding == 0){
tri = 0;
}
Expand Down
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