Update README.md

README.md

@@ -37,20 +37,20 @@ As an alternative to the command line, you can also use a graphical interface. W
 
 Please download and install the following *required* software:
 
-- [ ] A code editor (e.g. [Visual Studio Code](https://code.visualstudio.com) or [Sublime](https://www.sublimetext.com)
-- [ ] [Connectome Workbench](https://www.humanconnectome.org/software/connectome-workbench) for viewing MRI data
-- [ ] [Globus Connect Personal](https://wiki.hpc.uconn.edu/index.php/Globus_Connect) for transferring files to the compute cluster. You may need to be on the campus netwokr to access this site.
-- [ ] [Python 3.7 Anaconda distribution](https://www.anaconda.com/distribution/)
+- [x] A code editor (e.g. [Visual Studio Code](https://code.visualstudio.com) or [Sublime](https://www.sublimetext.com)
+- [x] [Connectome Workbench](https://www.humanconnectome.org/software/connectome-workbench) for viewing MRI data
+- [x] [Globus Connect Personal](https://wiki.hpc.uconn.edu/index.php/Globus_Connect) for transferring files to the compute cluster. You may need to be on the campus netwokr to access this site.
+- [x] [Python 3.7 Anaconda distribution](https://www.anaconda.com/distribution/)
 - [ ] For Windows users, you need an SSH client such as [PuTTY](https://www.chiark.greenend.org.uk/~sgtatham/putty/latest.html).
 
 
 ## Create accounts
 
-- [ ] Neuroimaging analysis takes lots of computing time. You’ll want to run some of your analysis on the UConn Storrs HPC cluster, for which you’ll need to [request an account](http://hpc.uconn.edu/storrs/account-application). You can find your advisor’s NetID at [http://phonebook.uconn.edu](http://phonebook.uconn.edu).
-- [ ] Once you get your account, make sure you can SSH to the cluster as described [here](https://wiki.hpc.uconn.edu/index.php/HPC_Getting_Started)
+- [x] Neuroimaging analysis takes lots of computing time. You’ll want to run some of your analysis on the UConn Storrs HPC cluster, for which you’ll need to [request an account](http://hpc.uconn.edu/storrs/account-application). You can find your advisor’s NetID at [http://phonebook.uconn.edu](http://phonebook.uconn.edu).
+- [x] Once you get your account, make sure you can SSH to the cluster as described [here](https://wiki.hpc.uconn.edu/index.php/HPC_Getting_Started)
 
 ## Learn Bash
-- [ ] Work through these modules at the free tutorial site [learnshell.org](https://www.learnshell.org):
+- [x] Work through these modules at the free tutorial site [learnshell.org](https://www.learnshell.org):
 	- Hello world
 	- Variables
 	- Passing Arguments to the Script
@@ -59,7 +59,7 @@ Please download and install the following *required* software:
 	- Loops
 
 ## Learn Git
-- [ ] Follow along with the examples in the [Beginner's Guide to Git](https://www.freecodecamp.org/news/the-beginners-guide-to-git-github/) (for command line users)
+- [x] Follow along with the examples in the [Beginner's Guide to Git](https://www.freecodecamp.org/news/the-beginners-guide-to-git-github/) (for command line users)
 
 
 ## Edit this file
@@ -77,8 +77,8 @@ When you see this online, you should see that the steps you need to complete hav
 In Markdown, a checkbox is a special list element written as:
 
 ```markdown
-- [ ] Todo Item 1
-- [ ] Todo Item 2
+- [x] Todo Item 1
+- [x] Todo Item 2
 
 ```
 
@@ -124,9 +124,9 @@ Rearrange the lines below to reflect your preference for the pipeline presentati
 
 1. The lefthand pane will show any new or modified files in your workspace. `README.md` should have a yellow icon, indicating it has uncommited changes.
 2. Click **Commit to master** to commit changes to your local repository
-	![](img/commit.png)
+	![x](img/commit.png)
 
 3. Click **Push origin** to send your changes to your remote repository
-	![](img/push.png)
+	![x](img/push.png)
 
 4. On GitHub, [create a pull request](https://help.github.com/articles/creating-a-pull-request/) to submit your work.