reorganize.sh

#!/bin/bash
# rename DICOM folders to help bidsmap

for SUBJECT_DIR in `ls -d /data/raw/sub-*`; do
    for d in ${SUBJECT_DIR}/*; do
        dicomsort.py -r -e .dcm $d
    done
    mv ${SUBJECT_DIR}/*/* ${SUBJECT_DIR}
    rm -rf ${SUBJECT_DIR}/[1-9]*
done