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alo18003 · Apr 19, 2020 · c3b97c5 · c3b97c5
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diff --git a/contrasts.tsv b/contrasts.tsv
@@ -0,0 +1,2 @@
+contrast	happy	sad
+happy-sad	1	-1
diff --git a/error_3304162_4294967294.log b/error_3304162_4294967294.log
@@ -0,0 +1,26 @@
+You are using fMRIPrep-1.5.9, and a newer version of fMRIPrep is available: 20.0.5.
+Please check out our documentation about how and when to upgrade:
+https://fmriprep.readthedocs.io/en/latest/faq.html#upgrading
+WARNING: Version 1.5.9 of fMRIPrep (current) has been FLAGGED
+(reason: Phase-difference fieldmap bug).
+That means some severe flaw was found in it and we strongly
+discourage its usage.
+Although ``--fs-no-reconall`` was not set (i.e., FreeSurfer is to be run), no FreeSurfer output space (valid values are: fsaverage5, fsnative, fsaverage, fsaverage6) was selected. Adding default "fsaverage5" to the list of output spaces.
+/usr/local/miniconda/lib/python3.7/site-packages/nipype/algorithms/confounds.py:1182: FutureWarning: `rcond` parameter will change to the default of machine precision times ``max(M, N)`` where M and N are the input matrix dimensions.
+To use the future default and silence this warning we advise to pass `rcond=None`, to keep using the old, explicitly pass `rcond=-1`.
+  betas = np.linalg.lstsq(X, data.T)[0]
+/usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range.
+  warnings.warn("No contour levels were found"
+/usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range.
+  warnings.warn("No contour levels were found"
+/usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range.
+  warnings.warn("No contour levels were found"
+/usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range.
+  warnings.warn("No contour levels were found"
+/usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range.
+  warnings.warn("No contour levels were found"
+/usr/local/miniconda/lib/python3.7/site-packages/scipy/fftpack/basic.py:160: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result.
+  z[index] = x
+/usr/local/miniconda/lib/python3.7/site-packages/nipype/algorithms/confounds.py:1182: FutureWarning: `rcond` parameter will change to the default of machine precision times ``max(M, N)`` where M and N are the input matrix dimensions.
+To use the future default and silence this warning we advise to pass `rcond=None`, to keep using the old, explicitly pass `rcond=-1`.
+  betas = np.linalg.lstsq(X, data.T)[0]
diff --git a/error_3304163_4294967294.log b/error_3304163_4294967294.log
@@ -0,0 +1,10 @@
+You are using fMRIPrep-1.5.9, and a newer version of fMRIPrep is available: 20.0.5.
+Please check out our documentation about how and when to upgrade:
+https://fmriprep.readthedocs.io/en/latest/faq.html#upgrading
+WARNING: Version 1.5.9 of fMRIPrep (current) has been FLAGGED
+(reason: Phase-difference fieldmap bug).
+That means some severe flaw was found in it and we strongly
+discourage its usage.
+Although ``--fs-no-reconall`` was not set (i.e., FreeSurfer is to be run), no FreeSurfer output space (valid values are: fsaverage6, fsaverage, fsnative, fsaverage5) was selected. Adding default "fsaverage5" to the list of output spaces.
+slurmstepd: *** JOB 3304163 ON cn162 CANCELLED AT 2020-04-17T16:04:35 DUE TO TIME LIMIT ***
+slurmstepd: Exceeded step memory limit at some point.
diff --git a/error_3304164_4294967294.log b/error_3304164_4294967294.log
@@ -0,0 +1,28 @@
+You are using fMRIPrep-1.5.9, and a newer version of fMRIPrep is available: 20.0.5.
+Please check out our documentation about how and when to upgrade:
+https://fmriprep.readthedocs.io/en/latest/faq.html#upgrading
+WARNING: Version 1.5.9 of fMRIPrep (current) has been FLAGGED
+(reason: Phase-difference fieldmap bug).
+That means some severe flaw was found in it and we strongly
+discourage its usage.
+Although ``--fs-no-reconall`` was not set (i.e., FreeSurfer is to be run), no FreeSurfer output space (valid values are: fsnative, fsaverage, fsaverage6, fsaverage5) was selected. Adding default "fsaverage5" to the list of output spaces.
+/usr/local/miniconda/lib/python3.7/site-packages/nipype/algorithms/confounds.py:1182: FutureWarning: `rcond` parameter will change to the default of machine precision times ``max(M, N)`` where M and N are the input matrix dimensions.
+To use the future default and silence this warning we advise to pass `rcond=None`, to keep using the old, explicitly pass `rcond=-1`.
+  betas = np.linalg.lstsq(X, data.T)[0]
+/usr/local/miniconda/lib/python3.7/site-packages/scipy/fftpack/basic.py:160: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result.
+  z[index] = x
+/usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range.
+  warnings.warn("No contour levels were found"
+/usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range.
+  warnings.warn("No contour levels were found"
+/usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range.
+  warnings.warn("No contour levels were found"
+/usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range.
+  warnings.warn("No contour levels were found"
+/usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range.
+  warnings.warn("No contour levels were found"
+/usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range.
+  warnings.warn("No contour levels were found"
+/usr/local/miniconda/lib/python3.7/site-packages/nipype/algorithms/confounds.py:1182: FutureWarning: `rcond` parameter will change to the default of machine precision times ``max(M, N)`` where M and N are the input matrix dimensions.
+To use the future default and silence this warning we advise to pass `rcond=None`, to keep using the old, explicitly pass `rcond=-1`.
+  betas = np.linalg.lstsq(X, data.T)[0]
diff --git a/error_3304165_4294967294.log b/error_3304165_4294967294.log
@@ -0,0 +1,26 @@
+You are using fMRIPrep-1.5.9, and a newer version of fMRIPrep is available: 20.0.5.
+Please check out our documentation about how and when to upgrade:
+https://fmriprep.readthedocs.io/en/latest/faq.html#upgrading
+WARNING: Version 1.5.9 of fMRIPrep (current) has been FLAGGED
+(reason: Phase-difference fieldmap bug).
+That means some severe flaw was found in it and we strongly
+discourage its usage.
+Although ``--fs-no-reconall`` was not set (i.e., FreeSurfer is to be run), no FreeSurfer output space (valid values are: fsaverage, fsnative, fsaverage5, fsaverage6) was selected. Adding default "fsaverage5" to the list of output spaces.
+/usr/local/miniconda/lib/python3.7/site-packages/scipy/fftpack/basic.py:160: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result.
+  z[index] = x
+/usr/local/miniconda/lib/python3.7/site-packages/nipype/algorithms/confounds.py:1182: FutureWarning: `rcond` parameter will change to the default of machine precision times ``max(M, N)`` where M and N are the input matrix dimensions.
+To use the future default and silence this warning we advise to pass `rcond=None`, to keep using the old, explicitly pass `rcond=-1`.
+  betas = np.linalg.lstsq(X, data.T)[0]
+/usr/local/miniconda/lib/python3.7/site-packages/nipype/algorithms/confounds.py:1182: FutureWarning: `rcond` parameter will change to the default of machine precision times ``max(M, N)`` where M and N are the input matrix dimensions.
+To use the future default and silence this warning we advise to pass `rcond=None`, to keep using the old, explicitly pass `rcond=-1`.
+  betas = np.linalg.lstsq(X, data.T)[0]
+/usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range.
+  warnings.warn("No contour levels were found"
+/usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range.
+  warnings.warn("No contour levels were found"
+/usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range.
+  warnings.warn("No contour levels were found"
+/usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range.
+  warnings.warn("No contour levels were found"
+/usr/local/miniconda/lib/python3.7/site-packages/matplotlib/contour.py:1173: UserWarning: No contour levels were found within the data range.
+  warnings.warn("No contour levels were found"
diff --git a/error_3304166_4294967294.log b/error_3304166_4294967294.log
@@ -0,0 +1,9 @@
+You are using fMRIPrep-1.5.9, and a newer version of fMRIPrep is available: 20.0.5.
+Please check out our documentation about how and when to upgrade:
+https://fmriprep.readthedocs.io/en/latest/faq.html#upgrading
+WARNING: Version 1.5.9 of fMRIPrep (current) has been FLAGGED
+(reason: Phase-difference fieldmap bug).
+That means some severe flaw was found in it and we strongly
+discourage its usage.
+Although ``--fs-no-reconall`` was not set (i.e., FreeSurfer is to be run), no FreeSurfer output space (valid values are: fsaverage, fsaverage5, fsnative, fsaverage6) was selected. Adding default "fsaverage5" to the list of output spaces.
+slurmstepd: *** JOB 3304166 ON cn167 CANCELLED AT 2020-04-18T13:52:48 DUE TO TIME LIMIT ***
diff --git a/error_3306117_4294967294.log b/error_3306117_4294967294.log
@@ -0,0 +1,10 @@
+You are using fMRIPrep-1.5.9, and a newer version of fMRIPrep is available: 20.0.5.
+Please check out our documentation about how and when to upgrade:
+https://fmriprep.readthedocs.io/en/latest/faq.html#upgrading
+WARNING: Version 1.5.9 of fMRIPrep (current) has been FLAGGED
+(reason: Phase-difference fieldmap bug).
+That means some severe flaw was found in it and we strongly
+discourage its usage.
+Although ``--fs-no-reconall`` was not set (i.e., FreeSurfer is to be run), no FreeSurfer output space (valid values are: fsaverage, fsaverage6, fsaverage5, fsnative) was selected. Adding default "fsaverage5" to the list of output spaces.
+fMRIPrep failed: Workflow did not execute cleanly. Check log for details
+Preprocessing did not finish successfully. Errors occurred while processing data from participants: NDARAC853DTE (1). Check the HTML reports for details.
diff --git a/error_3306173_4294967294.log b/error_3306173_4294967294.log
@@ -0,0 +1,10 @@
+You are using fMRIPrep-1.5.9, and a newer version of fMRIPrep is available: 20.0.5.
+Please check out our documentation about how and when to upgrade:
+https://fmriprep.readthedocs.io/en/latest/faq.html#upgrading
+WARNING: Version 1.5.9 of fMRIPrep (current) has been FLAGGED
+(reason: Phase-difference fieldmap bug).
+That means some severe flaw was found in it and we strongly
+discourage its usage.
+Although ``--fs-no-reconall`` was not set (i.e., FreeSurfer is to be run), no FreeSurfer output space (valid values are: fsaverage, fsaverage6, fsnative, fsaverage5) was selected. Adding default "fsaverage5" to the list of output spaces.
+fMRIPrep failed: Workflow did not execute cleanly. Check log for details
+Preprocessing did not finish successfully. Errors occurred while processing data from participants: NDARAC853DTE (1). Check the HTML reports for details.
diff --git a/error_3306210_4294967294.log b/error_3306210_4294967294.log
@@ -0,0 +1,18 @@
+You are using fMRIPrep-1.5.9, and a newer version of fMRIPrep is available: 20.0.5.
+Please check out our documentation about how and when to upgrade:
+https://fmriprep.readthedocs.io/en/latest/faq.html#upgrading
+WARNING: Version 1.5.9 of fMRIPrep (current) has been FLAGGED
+(reason: Phase-difference fieldmap bug).
+That means some severe flaw was found in it and we strongly
+discourage its usage.
+Traceback (most recent call last):
+  File "/usr/local/miniconda/bin/fmriprep", line 10, in <module>
+    sys.exit(main())
+  File "/usr/local/miniconda/lib/python3.7/site-packages/fmriprep/cli/run.py", line 318, in main
+    validate_input_dir(exec_env, opts.bids_dir, opts.participant_label)
+  File "/usr/local/miniconda/lib/python3.7/site-packages/fmriprep/utils/bids.py", line 136, in validate_input_dir
+    raise RuntimeError(error_msg % ','.join(bad_labels))
+RuntimeError: Data for requested participant(s) label(s) not found. Could not find data for participant(s): NDARAP782TVC. Please verify the requested participant labels. This error can be caused by the input data not being accessible inside the singularity container. Please make sure all paths are mapped properly (see https://www.sylabs.io/guides/3.0/user-guide/bind_paths_and_mounts.html)
+Sentry is attempting to send 0 pending error messages
+Waiting up to 2 seconds
+Press Ctrl-C to quit
diff --git a/error_3306240_4294967294.log b/error_3306240_4294967294.log
@@ -0,0 +1,21 @@
+You are using fMRIPrep-1.5.9, and a newer version of fMRIPrep is available: 20.0.5.
+Please check out our documentation about how and when to upgrade:
+https://fmriprep.readthedocs.io/en/latest/faq.html#upgrading
+WARNING: Version 1.5.9 of fMRIPrep (current) has been FLAGGED
+(reason: Phase-difference fieldmap bug).
+That means some severe flaw was found in it and we strongly
+discourage its usage.
+Although ``--fs-no-reconall`` was not set (i.e., FreeSurfer is to be run), no FreeSurfer output space (valid values are: fsaverage, fsaverage6, fsnative, fsaverage5) was selected. Adding default "fsaverage5" to the list of output spaces.
+Process Process-2:
+Traceback (most recent call last):
+  File "/usr/local/miniconda/lib/python3.7/multiprocessing/process.py", line 297, in _bootstrap
+    self.run()
+  File "/usr/local/miniconda/lib/python3.7/multiprocessing/process.py", line 99, in run
+    self._target(*self._args, **self._kwargs)
+  File "/usr/local/miniconda/lib/python3.7/site-packages/fmriprep/cli/run.py", line 669, in build_workflow
+    work_dir=str(work_dir),
+  File "/usr/local/miniconda/lib/python3.7/site-packages/fmriprep/workflows/base.py", line 265, in init_fmriprep_wf
+    use_syn=use_syn,
+  File "/usr/local/miniconda/lib/python3.7/site-packages/fmriprep/workflows/base.py", line 479, in init_single_subject_wf
+    subject_id, task_id if task_id else '<all>'))
+Exception: No BOLD images found for participant NDARAP782TVC and task <all>. All workflows require BOLD images.
diff --git a/error_3306267_4294967294.log b/error_3306267_4294967294.log
@@ -0,0 +1,31 @@
+You are using fMRIPrep-1.5.9, and a newer version of fMRIPrep is available: 20.0.5.
+Please check out our documentation about how and when to upgrade:
+https://fmriprep.readthedocs.io/en/latest/faq.html#upgrading
+WARNING: Version 1.5.9 of fMRIPrep (current) has been FLAGGED
+(reason: Phase-difference fieldmap bug).
+That means some severe flaw was found in it and we strongly
+discourage its usage.
+Although ``--fs-no-reconall`` was not set (i.e., FreeSurfer is to be run), no FreeSurfer output space (valid values are: fsnative, fsaverage, fsaverage5, fsaverage6) was selected. Adding default "fsaverage5" to the list of output spaces.
+Process Process-2:
+Traceback (most recent call last):
+  File "/usr/local/miniconda/lib/python3.7/multiprocessing/process.py", line 297, in _bootstrap
+    self.run()
+  File "/usr/local/miniconda/lib/python3.7/multiprocessing/process.py", line 99, in run
+    self._target(*self._args, **self._kwargs)
+  File "/usr/local/miniconda/lib/python3.7/site-packages/fmriprep/cli/run.py", line 669, in build_workflow
+    work_dir=str(work_dir),
+  File "/usr/local/miniconda/lib/python3.7/site-packages/fmriprep/workflows/base.py", line 265, in init_fmriprep_wf
+    use_syn=use_syn,
+  File "/usr/local/miniconda/lib/python3.7/site-packages/fmriprep/workflows/base.py", line 622, in init_single_subject_wf
+    use_syn=use_syn,
+  File "/usr/local/miniconda/lib/python3.7/site-packages/fmriprep/workflows/bold/base.py", line 435, in init_func_preproc_wf
+    tr=metadata.get("RepetitionTime")),
+  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 611, in __init__
+    from_file=from_file, resource_monitor=resource_monitor, **inputs
+  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/core.py", line 183, in __init__
+    self.inputs = self.input_spec(**inputs)
+  File "/usr/local/miniconda/lib/python3.7/site-packages/nipype/interfaces/base/specs.py", line 66, in __init__
+    super(BaseTraitedSpec, self).__init__(**kwargs)
+  File "/usr/local/miniconda/lib/python3.7/site-packages/traits/trait_handlers.py", line 172, in error
+    value )
+traits.trait_errors.TraitError: The 'tr' trait of a FunctionalSummaryInputSpec instance must be a float, but a value of None <class 'NoneType'> was specified.
diff --git a/error_3306270_4294967294.log b/error_3306270_4294967294.log
@@ -0,0 +1,9 @@
+You are using fMRIPrep-1.5.9, and a newer version of fMRIPrep is available: 20.0.5.
+Please check out our documentation about how and when to upgrade:
+https://fmriprep.readthedocs.io/en/latest/faq.html#upgrading
+WARNING: Version 1.5.9 of fMRIPrep (current) has been FLAGGED
+(reason: Phase-difference fieldmap bug).
+That means some severe flaw was found in it and we strongly
+discourage its usage.
+Although ``--fs-no-reconall`` was not set (i.e., FreeSurfer is to be run), no FreeSurfer output space (valid values are: fsnative, fsaverage, fsaverage6, fsaverage5) was selected. Adding default "fsaverage5" to the list of output spaces.
+slurmstepd: *** JOB 3306270 ON cn167 CANCELLED AT 2020-04-18T16:31:04 DUE TO TIME LIMIT ***