REL: 1.0.0

DESCRIPTION

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+Package: Drosophila.melanogaster
+Title: Annotation package for the Drosophila.melanogaster object
+Description: Contains the Drosophila.melanogaster object to access data from several related annotation packages.
+Version: 1.0.0
+Author: Pariksheet Nanda <pariksheet.nanda@uconn.edu>
+Maintainer: Pariksheet Nanda <pariksheet.nanda@uconn.edu>
+Depends: R (>= 1.6), AnnotationDbi (>= 1.17.11), methods, OrganismDbi, GenomicFeatures, GO.db, org.Dm.eg.db, TxDb.Dmelanogaster.UCSC.dm6.refGene
+Imports: GenomicFeatures, AnnotationDbi
+License: Artistic-2.0
+organism: Drosophila melanogaster
+species: Drosophila melanogaster
+biocViews: AnnotationData, Genetics, OrganismDb, Drosophila_melanogaster

NAMESPACE

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+# A NAMESPACE is strictly required by R 2.14 or higher.
+import(OrganismDbi)

R/zzz.R

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+## .onLoad gets the data.frame from the /data directory
+.onLoad <- function(libname, pkgname) {
+  load(system.file("data","graphInfo.rda",package=pkgname,
+                         lib.loc=libname))
+  OrganismDbi:::.loadOrganismDbiPkg(pkgname=pkgname,
+                          graphInfo=graphInfo)
+}
+
+

README.md

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+## Summary
+
+Combines GO, TxDb and OrgDb databases, so that you can run database
+queries like:
+
+```R
+library(Drosophila.melanogaster)
+
+tx <- transcripts(Drosophila.melanogaster,
+                  columns = c("TXID", "TXNAME", "GENEID", "ENSEMBL"))
+```
+
+## Installation
+
+```R
+install.packages("devtools")
+host="https://github.uconn.edu/api/v3"
+devtools::install_github("CoreLab/TxDb.Dmelanogaster.UCSC.dm6.refGene", host = host)
+devtools::install_github("CoreLab/Drosophila.melanogaster", host = host)
+```

man/Drosophila.melanogaster.Rd

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+\name{Drosophila.melanogaster}
+\docType{data}
+\alias{Drosophila.melanogaster}
+\title{Annotation package that collates several annotation resources.}
+\description{This data object was automatically created by Pariksheet Nanda <pariksheet.nanda@uconn.edu>. It
+  represents a collection of annotation packages that can be used as a
+  single object named Drosophila.melanogaster.  This object can be used with the
+  standard four accessor method for all AnnotationDbi objects.  Namely:
+  \code{cols}, \code{keytype}, \code{keys} and \code{select}.  Users are
+  encouraged to read the vignette from the \code{OrganismDbi} package for
+  more details.}
+\usage{library(Drosophila.melanogaster)}
+\keyword{datasets}
+\examples{
+  Drosophila.melanogaster
+  cls <- columns(Drosophila.melanogaster)
+  cls
+  cls <- cls[c(1,19,45)]
+  kts <- keytypes(Drosophila.melanogaster)
+  kt <- kts[2]
+  kts
+  ks <- head(keys(Drosophila.melanogaster, keytype=kts[2]))
+  ks
+  res <- select(Drosophila.melanogaster, keys=ks, columns=cls, keytype=kt)
+  head(res)
+}