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groHMM/NAMESPACE

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useDynLib(groHMM)
import(MASS, parallel, S4Vectors, IRanges, GenomeInfoDb, GenomicRanges, GenomicAlignments, rtracklayer)
export(writeWiggle, detectTranscripts, makeConsensusAnnotations,
evaluateHMMInAnnotations, windowAnalysis, breakTranscriptsOnGenes,
combineTranscripts, getTxDensity, limitToXkb, runMetaGene, metaGene,
pausingIndex, polymeraseWave, getCores, averagePlot, countMappableReadsInInterval,
expressedGenes, metaGeneMatrix, metaGene_nL, readBed, RgammaMLE, Rnorm,
Rnorm.exp, tlsDeming, tlsLoess, tlsSvd)