CSE 5810 Biomedical Informatics (Spring 2022)

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Implementation Project Final Status

Frank Zappulla

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Requirements

• For Windows Users Only - install WSL2
  • This will give you a real linux terminal where you can use conda
• Conda
  • If you don't have Conda, you should install Miniconda instead of Conda
• Docker
  • If you are on a Windows machine, you must install WSL2 first

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Getting Started Instructions

1. Start your local instance of HAPI FHIR
2. clone this repository
   • git clone https://github.uconn.edu/frz02001/cse5810_implementation.git
3. Change directory into this repository
   • cd cse5810_implementation
4. Create your conda environment using the included yaml file
   • conda env create --file=hapi_fhir.yaml
   • You should first alter the prefix: /home/frank/miniconda3/envs/hapi_fhir part of the yaml file to reflect your particular conda environment. This will likely be /home/$USER/miniconda3/envs/hapi_fhir
5. Activate the conda environment you just created
   • conda activate hapi_fhir
6. Launch jupyter lab
   • jupyter lab
7. Copy and paste the url in the terminal into your browser
8. Double click on the hapi_fhir.ipynb file to open the developer's notebook
9. You should now be using the notebook that was demonstrated during class