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executable file 21 lines (16 sloc) 595 Bytes
#!/bin/bash
# Add your SLURM options here
#SBATCH --mail-type=ALL
#SBATCH --mail-user=oliver.mcneil@uconn.edu
#SBATCH --nodes=1
#SBATCH --ntasks=1
#SBATCH --cpus-per-task=3
#SBATCH --mem=4gb
#SBATCH --time=04:00:00
#SBATCH -e error_%A_%a.log
#SBATCH -o output_%A_%a.log
#SBATCH --job-name=mriqc
#SBATCH --partition=serial
# Add commands needed to run mriqc
module load singularity
singularity run --cleanenv --bind /scratch/psyc5171/exercises/mbdata/bids:/data --bind /scratch/ham19006/hw3/mriqc_output:/out /scratch/psyc5171/containers/mriqc_latest.sif /data /out participant --n_procs 3