initial version

.Rbuildignore

@@ -0,0 +1,4 @@
+^.*\.Rproj$
+^\.Rproj\.user$
+^doc$
+^Meta$

.Rproj.user/43F9182D/build_options

@@ -0,0 +1,7 @@
+auto_roxygenize_for_build_and_reload="1"
+auto_roxygenize_for_build_package="1"
+auto_roxygenize_for_check="1"
+live_preview_website="1"
+makefile_args=""
+preview_website="1"
+website_output_format="all"

.Rproj.user/43F9182D/console06/INDEX001

@@ -0,0 +1 @@
+[{"allow_restart":true,"alt_buffer":false,"autoclose":1,"buffered_output":"\n\n\n\n\n\n\n\n\n","caption":"Terminal 1","channel_id":"5921","channel_mode":1,"child_procs":false,"cols":92,"cwd":"~/Box Sync/CorNetwork_Project/edgefinder","exit_code":1,"handle":"66F40F68","interaction_mode":2,"max_output_lines":1000,"restarted":false,"rows":13,"shell_type":7,"show_on_output":false,"terminal_sequence":1,"title":"~/Box Sync/CorNetwork_Project/edgefinder","track_env":true,"zombie":false}]

.Rproj.user/43F9182D/cpp-definition-cache

@@ -0,0 +1 @@
+[]

.Rproj.user/43F9182D/pcs/debug-breakpoints.pper

@@ -0,0 +1,5 @@
+{
+    "debugBreakpointsState": {
+        "breakpoints": []
+    }
+}

.Rproj.user/43F9182D/pcs/files-pane.pper

@@ -0,0 +1,13 @@
+{
+    "path": "~/Dropbox/Packages/edgefinder/doc",
+    "sortOrder": [
+        {
+            "columnIndex": 4,
+            "ascending": false
+        },
+        {
+            "columnIndex": 2,
+            "ascending": true
+        }
+    ]
+}

.Rproj.user/43F9182D/pcs/source-pane.pper

@@ -0,0 +1,3 @@
+{
+    "activeTab": 2
+}

.Rproj.user/43F9182D/pcs/windowlayoutstate.pper

@@ -0,0 +1,14 @@
+{
+    "left": {
+        "splitterpos": 272,
+        "topwindowstate": "NORMAL",
+        "panelheight": 664,
+        "windowheight": 702
+    },
+    "right": {
+        "splitterpos": 426,
+        "topwindowstate": "NORMAL",
+        "panelheight": 664,
+        "windowheight": 702
+    }
+}

.Rproj.user/43F9182D/pcs/workbench-pane.pper

@@ -0,0 +1,5 @@
+{
+    "TabSet1": 3,
+    "TabSet2": 3,
+    "TabZoom": {}
+}

.Rproj.user/43F9182D/persistent-state

@@ -0,0 +1,8 @@
+build-last-errors="[]"
+build-last-errors-base-dir="~/Dropbox/Packages/edgefinder/"
+build-last-outputs="[{\"type\":0,\"output\":\"==> devtools::document(roclets = c('rd', 'collate', 'namespace', 'vignette'))\\n\\n\"},{\"type\":2,\"output\":\"Updating edgefinder documentation\\n\"},{\"type\":2,\"output\":\"Loading edgefinder\\n\"},{\"type\":1,\"output\":\"Writing NAMESPACE\\n\"},{\"type\":1,\"output\":\"Writing NAMESPACE\\n\"},{\"type\":2,\"output\":\"Updating vignettes\\n\"},{\"type\":1,\"output\":\"Documentation completed\\n\\n\"},{\"type\":0,\"output\":\"==> R CMD INSTALL --no-multiarch --with-keep.source edgefinder\\n\\n\"},{\"type\":1,\"output\":\"* installing to library ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library’\\n\"},{\"type\":1,\"output\":\"* installing *source* package ‘edgefinder’ ...\\n\"},{\"type\":1,\"output\":\"** using staged installation\\n\"},{\"type\":1,\"output\":\"** R\\n\"},{\"type\":1,\"output\":\"\"},{\"type\":1,\"output\":\"** data\\n\"},{\"type\":1,\"output\":\"*** moving datasets to lazyload DB\\n\"},{\"type\":1,\"output\":\"\"},{\"type\":1,\"output\":\"** byte-compile and prepare package for lazy loading\\n\"},{\"type\":1,\"output\":\"\"},{\"type\":1,\"output\":\"** help\\n\"},{\"type\":1,\"output\":\"\"},{\"type\":1,\"output\":\"*** installing help indices\\n\"},{\"type\":1,\"output\":\"\"},{\"type\":1,\"output\":\"** building package indices\\n\"},{\"type\":1,\"output\":\"\"},{\"type\":1,\"output\":\"** installing vignettes\\n\"},{\"type\":1,\"output\":\"\"},{\"type\":1,\"output\":\"** testing if installed package can be loaded from temporary location\\n\"},{\"type\":1,\"output\":\"\"},{\"type\":1,\"output\":\"** testing if installed package can be loaded from final location\\n\"},{\"type\":1,\"output\":\"\"},{\"type\":1,\"output\":\"** testing if installed package keeps a record of temporary installation path\\n\"},{\"type\":1,\"output\":\"* DONE (edgefinder)\\n\"},{\"type\":1,\"output\":\"\"}]"
+compile_pdf_state="{\"tab_visible\":false,\"running\":false,\"target_file\":\"\",\"output\":\"\",\"errors\":[]}"
+files.monitored-path=""
+find-in-files-state="{\"handle\":\"\",\"input\":\"\",\"path\":\"\",\"regex\":false,\"ignoreCase\":false,\"results\":{\"file\":[],\"line\":[],\"lineValue\":[],\"matchOn\":[],\"matchOff\":[],\"replaceMatchOn\":[],\"replaceMatchOff\":[]},\"running\":false,\"replace\":false,\"preview\":false,\"gitFlag\":false,\"replacePattern\":\"\"}"
+imageDirtyState="1"
+saveActionState="-1"

.Rproj.user/43F9182D/rmd-outputs

@@ -0,0 +1,8 @@
+/private/var/folders/lw/f9y_rrvs1lncs_8wvgg56kd00000gp/T/RtmpMSNhDi/preview-fe4ece1fb6e.dir/edgefinder.pdf
+/private/var/folders/lw/f9y_rrvs1lncs_8wvgg56kd00000gp/T/RtmpMSNhDi/preview-fe4e45da014b.dir/edgefinder.html
+/private/var/folders/lw/f9y_rrvs1lncs_8wvgg56kd00000gp/T/RtmpDlrmgt/preview-eb9f7662e2ce.dir/edgefinder.html
+
+
+
+
+

.Rproj.user/43F9182D/saved_source_markers

@@ -0,0 +1 @@
+{"active_set":"","sets":[]}

.Rproj.user/43F9182D/sources/prop/08EF61B6

@@ -0,0 +1,4 @@
+{
+    "cursorPosition": "3,22",
+    "scrollLine": "0"
+}

.Rproj.user/43F9182D/sources/prop/17C45040

@@ -0,0 +1,4 @@
+{
+    "cursorPosition" : "512,45",
+    "scrollLine" : "501"
+}

.Rproj.user/43F9182D/sources/prop/268C439B

@@ -0,0 +1,4 @@
+{
+    "cursorPosition": "9,17",
+    "scrollLine": "0"
+}

.Rproj.user/43F9182D/sources/prop/3545E1B5

@@ -0,0 +1 @@
+{}

.Rproj.user/43F9182D/sources/prop/707DE2BB

@@ -0,0 +1 @@
+{}

.Rproj.user/43F9182D/sources/prop/73839B89

@@ -0,0 +1,4 @@
+{
+    "cursorPosition": "13,29",
+    "scrollLine": "0"
+}

.Rproj.user/43F9182D/sources/prop/7FABB90B

@@ -0,0 +1 @@
+{}

.Rproj.user/43F9182D/sources/prop/8F178DC0

@@ -0,0 +1,4 @@
+{
+    "cursorPosition": "428,28",
+    "scrollLine": "0"
+}

.Rproj.user/43F9182D/sources/prop/C7E78658

@@ -0,0 +1,4 @@
+{
+    "cursorPosition" : "4,0",
+    "scrollLine" : "0"
+}

.Rproj.user/43F9182D/sources/prop/D7FD0573

@@ -0,0 +1,4 @@
+{
+    "cursorPosition": "11,29",
+    "scrollLine": "0"
+}

.Rproj.user/43F9182D/sources/prop/FB923355

@@ -0,0 +1,5 @@
+{
+    "cursorPosition" : "141,25",
+    "scrollLine" : "134",
+    "working_dir" : "current"
+}

.Rproj.user/43F9182D/sources/prop/INDEX

@@ -0,0 +1,40 @@
+~%2FBox%20Sync%2FCorNetwork_Project%2Fedgefinder%2FDESCRIPTION="BD6E27DA"
+~%2FBox%20Sync%2FCorNetwork_Project%2Fedgefinder%2FNAMESPACE="F5F5A899"
+~%2FBox%20Sync%2FCorNetwork_Project%2Fedgefinder%2FR%2Fedgefinder.R="7E5E47A6"
+~%2FBox%20Sync%2FCorNetwork_Project%2Fedgefinder%2Fman%2FDUP.Rd="DCADE622"
+~%2FBox%20Sync%2FCorNetwork_Project%2Fedgefinder%2Fman%2FEM.Rd="D6EB3B12"
+~%2FBox%20Sync%2FCorNetwork_Project%2Fedgefinder%2Fman%2FWT.Rd="88AE8AC5"
+~%2FBox%20Sync%2FCorNetwork_Project%2Fedgefinder%2Fman%2Fedgefinder.Rd="58782F92"
+~%2FBox%20Sync%2FCorNetwork_Project%2Fedgefinder%2Fman%2FplotBitmapCC.Rd="1D2C4151"
+~%2FBox%20Sync%2FCorNetwork_Project%2Fedgefinder%2Fman%2FplotDegCC.Rd="4AE36A33"
+~%2FBox%20Sync%2FCorNetwork_Project%2Fedgefinder%2Fman%2FplotMixture.Rd="E5101845"
+~%2FBox%20Sync%2FCorNetwork_Project%2Fedgefinder%2Fman%2FshortSummary.Rd="7BEE52C9"
+~%2FBox%20Sync%2FCorNetwork_Project%2Fedgefinder%2Fman%2Fsummary.edgefinder.Rd="AE7CC627"
+~%2FBox%20Sync%2FCorNetwork_Project%2Fedgefinder%2Fvignettes%2FExamples.Rmd="9FC8CA06"
+~%2FBox%20Sync%2FCorNetwork_Project%2Fedgefinder%2Fvignettes%2FExamples.html="1BDD16EE"
+~%2FBox%20Sync%2FCorNetwork_Project%2Fedgefinder%2Fvignettes%2Fedgefinder.R="D5383BFE"
+~%2FBox%20Sync%2FCorNetwork_Project%2Fedgefinder%2Fvignettes%2Fedgefinder.Rmd="C6822807"
+~%2FBox%2FCorNetwork_Project%2Fedgefinder%2FR%2Fedgefinder.R="17C45040"
+~%2FBox%2FCorNetwork_Project%2Fedgefinder%2Fvignettes%2Fedgefinder.Rmd="FB923355"
+~%2FDesktop%2FZEPT_A_1341276_SM7185%20(1)%2FR%20code%20CSA%20PTSD%20EJPT%20June%2026%202017.R="8EDF9A5B"
+~%2FDropbox%2FCMapCodeWork%2FConeDistance.R="724A7613"
+~%2FDropbox%2FCMapCodeWork%2FConeDistance01.R="977F8AD5"
+~%2FDropbox%2FGuy.R="BAB987C4"
+~%2FDropbox%2FGuy091218.R="FAB15A69"
+~%2FDropbox%2FMDS%2Faas%2Fmdsanalysis.r="C7E78658"
+~%2FDropbox%2FPackages%2Fedgefinder%2F.Rbuildignore="3545E1B5"
+~%2FDropbox%2FPackages%2Fedgefinder%2F.gitignore="707DE2BB"
+~%2FDropbox%2FPackages%2Fedgefinder%2FDESCRIPTION="73839B89"
+~%2FDropbox%2FPackages%2Fedgefinder%2FNAMESPACE="268C439B"
+~%2FDropbox%2FPackages%2Fedgefinder%2FR%2Fedgefinder.R="8F178DC0"
+~%2FDropbox%2FPackages%2Fedgefinder%2Fdoc%2Fedgefinder.Rmd="D7FD0573"
+~%2FDropbox%2FPackages%2Fedgefinder%2Fvignettes%2Fedgefinder.Rmd="08EF61B6"
+~%2FDropbox%2FPackages%2Fedgefinder%2Fvignettes%2Fedgefinder.md="7FABB90B"
+~%2FDropbox%2FProjects%2FCorrelationNetworks%2FCNV03.R="B270593A"
+~%2FDropbox%2FProjects%2FCorrelationNetworks%2FEdgeFinder%2FCNV_WvsP.R="65139561"
+~%2FDropbox%2FProjects%2FCorrelationNetworks%2FEdgeFinder%2FToDo.txt="E7188EA7"
+~%2FDropbox%2FProjects%2FGaya%2FProject2%2Friboprof01.Rmd="66D24356"
+~%2FDropbox%2FProjects%2FGaya%2FProject2%2Friboprof02.Rmd="3C37A340"
+~%2FDropbox%2FProjects%2FGaya%2FProject2%2Frp01.R="559018D3"
+~%2FDropbox%2FProjects%2FGaya%2FRP0827.R="9914CB74"
+~%2FDropbox%2Fbuild.txt="A7C98F10"

.Rproj.user/43F9182D/sources/s-918F8619/3FDFFDAC

@@ -0,0 +1,25 @@
+{
+    "id": "3FDFFDAC",
+    "path": null,
+    "project_path": null,
+    "type": "r_source",
+    "hash": "0",
+    "contents": "",
+    "dirty": true,
+    "created": 1562254910191.0,
+    "source_on_save": false,
+    "relative_order": 4,
+    "properties": {
+        "cursorPosition": "7,18",
+        "scrollLine": "0",
+        "tempName": "Untitled1"
+    },
+    "folds": "",
+    "lastKnownWriteTime": 8243105118349059431,
+    "encoding": "",
+    "collab_server": "",
+    "source_window": "",
+    "last_content_update": 1562257287832,
+    "read_only": false,
+    "read_only_alternatives": []
+}

.Rproj.user/43F9182D/sources/s-918F8619/3FDFFDAC-contents

@@ -0,0 +1,9 @@
+sigResid <- sort(union(Sres$rt,Sres$lt))
+G <- Sres$G
+tmpmat <- Matrix(0,G, G)
+vec <- rep(0, choose(G,2))
+vec[sigResid] <- 1
+tmpmat[upper.tri(tmpmat)] = vec
+AdjMat <- tmpmat+t(tmpmat)
+AdjMat1 <- getNeighborhood(AdjMat, numSteps=1)
+image(AdjMat1$Mat)

.Rproj.user/43F9182D/sources/s-918F8619/76CEB453-contents

@@ -0,0 +1,2 @@
+doc
+Meta

.Rproj.user/43F9182D/sources/s-918F8619/89DD615B-contents

@@ -0,0 +1,4 @@
+^.*\.Rproj$
+^\.Rproj\.user$
+^doc$
+^Meta$

.Rproj.user/43F9182D/sources/s-918F8619/A1F1319E

@@ -0,0 +1,24 @@
+{
+    "id": "A1F1319E",
+    "path": "~/Dropbox/Packages/edgefinder/vignettes/edgefinder.Rmd",
+    "project_path": "vignettes/edgefinder.Rmd",
+    "type": "r_markdown",
+    "hash": "0",
+    "contents": "",
+    "dirty": false,
+    "created": 1596070839055.0,
+    "source_on_save": false,
+    "relative_order": 3,
+    "properties": {
+        "cursorPosition": "3,22",
+        "scrollLine": "0"
+    },
+    "folds": "",
+    "lastKnownWriteTime": 1596070910,
+    "encoding": "UTF-8",
+    "collab_server": "",
+    "source_window": "",
+    "last_content_update": 1596070910163,
+    "read_only": false,
+    "read_only_alternatives": []
+}