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tham's service, send pathway gene names
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root committed Dec 2, 2015
1 parent 63c1eb9 commit 9886e47
Showing 1 changed file with 15 additions and 7 deletions.
22 changes: 15 additions & 7 deletions VQI_PathwayEditor.js
Original file line number Diff line number Diff line change
Expand Up @@ -7,8 +7,9 @@ var VQI_PathwayEditor = function(parent) {
var services = {};

services['pathwayFinder'] = serverURL + 'PathwayParser/ajaxJSON.php';
services['pathwayScorer'] = 'http://137.99.11.36/pathwayVisual/ScoreSystem/getScore.php';
services['pathwaySaver'] = serverURL + 'PathwayParser/updateDB_json.php';
services['pathwayScorer'] = 'http://137.99.11.36/pathwayVisual/ScoreSystem/getScore.php';
services['pathwayWeightedScorer'] = 'http://137.99.11.36/pathway2/pathwayweightedscorer.php';
services['objectFinder'] = 'http://137.99.11.122/pathway2/qsys_json.php';

// Globals
Expand Down Expand Up @@ -947,13 +948,19 @@ var VQI_PathwayEditor = function(parent) {
nodePath.push([])
for (var j = 0; j < selectedPaths[n].length; j++) {
if(j < selectedPaths[n].length-1){
var sourceNode = cy.elements("edge[id = \"" + selectedPaths[n][j] + "\"]").data('source');
nodePath[n].push(sourceNode);
var sourceNodeId = cy.elements("edge[id = \"" + selectedPaths[n][j] + "\"]").data('source');
var sourceNodeName = cy.elements("node[id = \"" + sourceNodeId + "\"]").data('name');
console.log(sourceNodeName);
nodePath[n].push(sourceNodeName);
} else {
var sourceNode = cy.elements("edge[id = \"" + selectedPaths[n][j] + "\"]").data('source');
var targetNode = cy.elements("edge[id = \"" + selectedPaths[n][j] + "\"]").data('target');
nodePath[n].push(sourceNode);
nodePath[n].push(targetNode);
var sourceNodeId = cy.elements("edge[id = \"" + selectedPaths[n][j] + "\"]").data('source');
var targetNodeId = cy.elements("edge[id = \"" + selectedPaths[n][j] + "\"]").data('target');
var sourceNodeName = cy.elements("node[id = \"" + sourceNodeId + "\"]").data('name');
var targetNodeName = cy.elements("node[id = \"" + targetNodeId + "\"]").data('name');
nodePath[n].push(sourceNodeName);
nodePath[n].push(targetNodeName);
console.log(sourceNodeName);
console.log(targetNodeName);
}
}
}
Expand All @@ -969,6 +976,7 @@ var VQI_PathwayEditor = function(parent) {
}, function(yue_data) {
var selectedPaths = findPath(JSON.parse(states[states.length - 1]), sid, vid);
var nodePaths = convertEdgePathtoNodePath(selectedPaths);
console.log(JSON.stringify(nodePaths));
$.post(services['objectFinder'], {
data_paths : JSON.stringify(nodePaths)
}, function(tham_data) {
Expand Down

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