Removing directory and updating README.

mldrugdiscovery · May 6, 2016 · ffcdac3 · ffcdac3
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diff --git a/README.md b/README.md
@@ -80,13 +80,8 @@ cmake .
 make  
 ```
 
-Note that the directory **similarity_search** contains an Eclipse project that can be imported into [The Eclipse IDE for C/C++ Developers](http://www.eclipse.org/ide/).  A more detailed description is given in [in the manual](docs/manual.pdf).  
-
-Examples of using the software can be found in the directory [sample_scripts](sample_scripts). A good starting point is a script [sample_scripts/sample_run.sh](sample_scripts/sample_run.sh). This script uses small data sets stored in this repository. You can also download almost every data set used in our evaluations (see the section **Data sets** below). The downloaded data needs to be decompressed (you may need 7z, gzip, and bzip2). Then, copy data files to a directory of choice and set the environment variable:  
-
-```bash
-export DATA_DIR=[path to the chosen directory with data files]
-```
+Note that the directory **similarity_search** contains an Eclipse project that can be imported into [The Eclipse IDE for C/C++ Developers](http://www.eclipse.org/ide/).  A more detailed description is given in [in the manual](docs/manual.pdf), which also contains example of using the software.  
+You can also download almost every data set used in our previous evaluations (see the section **Data sets** below). The downloaded data needs to be decompressed (you may need 7z, gzip, and bzip2). Old experimental scripts can be found in the directory [previous_releases_scripts](previous_releases_scripts). However, they will work only with previous releases.
 
 Note that the benchmarking utility **supports caching of ground truth data**, so that ground truth data is not recomputed every time this utility is re-run on the same data set.
 

diff --git a/sample_scripts/README.md → previous_releases_scripts/README.md b/sample_scripts/README.md → previous_releases_scripts/README.md
diff --git a/sample_scripts/TuneOneMeth.sh → previous_releases_scripts/TuneOneMeth.sh b/sample_scripts/TuneOneMeth.sh → previous_releases_scripts/TuneOneMeth.sh
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diff --git a/sample_scripts/nips2013/ResultsItakuraSaito → ...ases_scripts/nips2013/ResultsItakuraSaito b/sample_scripts/nips2013/ResultsItakuraSaito → ...ases_scripts/nips2013/ResultsItakuraSaito
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diff --git a/sample_scripts/nips2013/ResultsKL → previous_releases_scripts/nips2013/ResultsKL b/sample_scripts/nips2013/ResultsKL → previous_releases_scripts/nips2013/ResultsKL
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diff --git a/...s2013/ResultsKL.buck50/final8/res_K=1.dat → ...s2013/ResultsKL.buck50/final8/res_K=1.dat b/...s2013/ResultsKL.buck50/final8/res_K=1.dat → ...s2013/ResultsKL.buck50/final8/res_K=1.dat
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diff --git a/sample_scripts/nips2013/ResultsL2 → previous_releases_scripts/nips2013/ResultsL2 b/sample_scripts/nips2013/ResultsL2 → previous_releases_scripts/nips2013/ResultsL2
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diff --git a/...le_scripts/nips2013/RunAllItakuraSaito.pl → ...es_scripts/nips2013/RunAllItakuraSaito.pl b/...le_scripts/nips2013/RunAllItakuraSaito.pl → ...es_scripts/nips2013/RunAllItakuraSaito.pl
diff --git a/sample_scripts/nips2013/RunAllKL.pl → ...ous_releases_scripts/nips2013/RunAllKL.pl b/sample_scripts/nips2013/RunAllKL.pl → ...ous_releases_scripts/nips2013/RunAllKL.pl
diff --git a/sample_scripts/nips2013/RunAllL2.pl → ...ous_releases_scripts/nips2013/RunAllL2.pl b/sample_scripts/nips2013/RunAllL2.pl → ...ous_releases_scripts/nips2013/RunAllL2.pl
diff --git a/sample_scripts/nips2013/RunBBKlExact.pl → ...releases_scripts/nips2013/RunBBKlExact.pl b/sample_scripts/nips2013/RunBBKlExact.pl → ...releases_scripts/nips2013/RunBBKlExact.pl
diff --git a/...ots_NumCloser_ImprEfficiency/plot_k_1.pdf → ...ots_NumCloser_ImprEfficiency/plot_k_1.pdf b/...ots_NumCloser_ImprEfficiency/plot_k_1.pdf → ...ots_NumCloser_ImprEfficiency/plot_k_1.pdf
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diff --git a/...ning/ResultsL2/OutFile.wikipedia_lsi128.1 → ...ning/ResultsL2/OutFile.wikipedia_lsi128.1 b/...ning/ResultsL2/OutFile.wikipedia_lsi128.1 → ...ning/ResultsL2/OutFile.wikipedia_lsi128.1
diff --git a/...ing/ResultsL2/OutFile.wikipedia_lsi128.10 → ...ing/ResultsL2/OutFile.wikipedia_lsi128.10 b/...ing/ResultsL2/OutFile.wikipedia_lsi128.10 → ...ing/ResultsL2/OutFile.wikipedia_lsi128.10
diff --git a/...s/smallworld_Apr2014/tunning/TuneAllKL.sh → ...s/smallworld_Apr2014/tunning/TuneAllKL.sh b/...s/smallworld_Apr2014/tunning/TuneAllKL.sh → ...s/smallworld_Apr2014/tunning/TuneAllKL.sh
diff --git a/...s/smallworld_Apr2014/tunning/TuneAllL2.sh → ...s/smallworld_Apr2014/tunning/TuneAllL2.sh b/...s/smallworld_Apr2014/tunning/TuneAllL2.sh → ...s/smallworld_Apr2014/tunning/TuneAllL2.sh
diff --git a/...2015/ResultsCosine/wikipedia/res_K=10.dat → ...2015/ResultsCosine/wikipedia/res_K=10.dat b/...2015/ResultsCosine/wikipedia/res_K=10.dat → ...2015/ResultsCosine/wikipedia/res_K=10.dat
diff --git a/...2015/ResultsCosine/wikipedia/res_K=10.rep → ...2015/ResultsCosine/wikipedia/res_K=10.rep b/...2015/ResultsCosine/wikipedia/res_K=10.rep → ...2015/ResultsCosine/wikipedia/res_K=10.rep
diff --git a/...sJSDivFast/wikipedia_lda_128/res_K=10.dat → ...sJSDivFast/wikipedia_lda_128/res_K=10.dat b/...sJSDivFast/wikipedia_lda_128/res_K=10.dat → ...sJSDivFast/wikipedia_lda_128/res_K=10.dat
diff --git a/...sJSDivFast/wikipedia_lda_128/res_K=10.rep → ...sJSDivFast/wikipedia_lda_128/res_K=10.rep b/...sJSDivFast/wikipedia_lda_128/res_K=10.rep → ...sJSDivFast/wikipedia_lda_128/res_K=10.rep
diff --git a/...ltsJSDivFast/wikipedia_lda_8/res_K=10.dat → ...ltsJSDivFast/wikipedia_lda_8/res_K=10.dat b/...ltsJSDivFast/wikipedia_lda_8/res_K=10.dat → ...ltsJSDivFast/wikipedia_lda_8/res_K=10.dat
diff --git a/...ltsJSDivFast/wikipedia_lda_8/res_K=10.rep → ...ltsJSDivFast/wikipedia_lda_8/res_K=10.rep b/...ltsJSDivFast/wikipedia_lda_8/res_K=10.rep → ...ltsJSDivFast/wikipedia_lda_8/res_K=10.rep
diff --git a/...ltsKLDivGen/wikipedia_lda128/res_K=10.dat → ...ltsKLDivGen/wikipedia_lda128/res_K=10.dat b/...ltsKLDivGen/wikipedia_lda128/res_K=10.dat → ...ltsKLDivGen/wikipedia_lda128/res_K=10.dat
diff --git a/...ltsKLDivGen/wikipedia_lda128/res_K=10.rep → ...ltsKLDivGen/wikipedia_lda128/res_K=10.rep b/...ltsKLDivGen/wikipedia_lda128/res_K=10.rep → ...ltsKLDivGen/wikipedia_lda128/res_K=10.rep
diff --git a/...sultsKLDivGen/wikipedia_lda8/res_K=10.dat → ...sultsKLDivGen/wikipedia_lda8/res_K=10.dat b/...sultsKLDivGen/wikipedia_lda8/res_K=10.dat → ...sultsKLDivGen/wikipedia_lda8/res_K=10.dat
diff --git a/...sultsKLDivGen/wikipedia_lda8/res_K=10.rep → ...sultsKLDivGen/wikipedia_lda8/res_K=10.rep b/...sultsKLDivGen/wikipedia_lda8/res_K=10.rep → ...sultsKLDivGen/wikipedia_lda8/res_K=10.rep
diff --git a/...sKLDivGenRQ/wikipedia_lda128/res_K=10.dat → ...sKLDivGenRQ/wikipedia_lda128/res_K=10.dat b/...sKLDivGenRQ/wikipedia_lda128/res_K=10.dat → ...sKLDivGenRQ/wikipedia_lda128/res_K=10.dat
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diff --git a/...ltsKLDivGenRQ/wikipedia_lda8/res_K=10.dat → ...ltsKLDivGenRQ/wikipedia_lda8/res_K=10.dat b/...ltsKLDivGenRQ/wikipedia_lda8/res_K=10.dat → ...ltsKLDivGenRQ/wikipedia_lda8/res_K=10.dat
diff --git a/...ltsKLDivGenRQ/wikipedia_lda8/res_K=10.rep → ...ltsKLDivGenRQ/wikipedia_lda8/res_K=10.rep b/...ltsKLDivGenRQ/wikipedia_lda8/res_K=10.rep → ...ltsKLDivGenRQ/wikipedia_lda8/res_K=10.rep
diff --git a/...ts/vldb2015/ResultsL2/cophir/res_K=10.dat → ...ts/vldb2015/ResultsL2/cophir/res_K=10.dat b/...ts/vldb2015/ResultsL2/cophir/res_K=10.dat → ...ts/vldb2015/ResultsL2/cophir/res_K=10.dat
diff --git a/...ts/vldb2015/ResultsL2/cophir/res_K=10.rep → ...ts/vldb2015/ResultsL2/cophir/res_K=10.rep b/...ts/vldb2015/ResultsL2/cophir/res_K=10.rep → ...ts/vldb2015/ResultsL2/cophir/res_K=10.rep
diff --git a/...ipts/vldb2015/ResultsL2/sift/res_K=10.dat → ...ipts/vldb2015/ResultsL2/sift/res_K=10.dat b/...ipts/vldb2015/ResultsL2/sift/res_K=10.dat → ...ipts/vldb2015/ResultsL2/sift/res_K=10.dat
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diff --git a/...ResultsNormLeven.bak/dna32_4/res_K=10.dat → ...ResultsNormLeven.bak/dna32_4/res_K=10.dat b/...ResultsNormLeven.bak/dna32_4/res_K=10.dat → ...ResultsNormLeven.bak/dna32_4/res_K=10.dat
diff --git a/...ResultsNormLeven.bak/dna32_4/res_K=10.rep → ...ResultsNormLeven.bak/dna32_4/res_K=10.rep b/...ResultsNormLeven.bak/dna32_4/res_K=10.rep → ...ResultsNormLeven.bak/dna32_4/res_K=10.rep
diff --git a/...15/ResultsProjData/cophir_l2/res_K=10.dat → ...15/ResultsProjData/cophir_l2/res_K=10.dat b/...15/ResultsProjData/cophir_l2/res_K=10.dat → ...15/ResultsProjData/cophir_l2/res_K=10.dat
diff --git a/...15/ResultsProjData/cophir_l2/res_K=10.rep → ...15/ResultsProjData/cophir_l2/res_K=10.rep b/...15/ResultsProjData/cophir_l2/res_K=10.rep → ...15/ResultsProjData/cophir_l2/res_K=10.rep
diff --git a/...tsProjData/dna32_4_normleven/res_K=10.dat → ...tsProjData/dna32_4_normleven/res_K=10.dat b/...tsProjData/dna32_4_normleven/res_K=10.dat → ...tsProjData/dna32_4_normleven/res_K=10.dat