report1.bib

@article {DGD:DGD1248,
author = {Gomer, Richard H. and Jang, Wonhee and Brazill, Derrick},
title = {Cell density sensing and size determination},
journal = {Development, Growth \& Differentiation},
volume = {53},
number = {4},
publisher = {Blackwell Publishing Ltd},
issn = {1440-169X},
url = {http://dx.doi.org/10.1111/j.1440-169X.2010.01248.x},
doi = {10.1111/j.1440-169X.2010.01248.x},
pages = {482--494},
keywords = {cell density sensing, cell number counting, chalone, Dictyostelium, quorum sensing, secreted},
year = {2011},
}

@article {CM:CM5,
author = {Shelden, Eric and Knecht, David A.},
title = {Dictyostelium cell shape generation requires myosin II},
journal = {Cell Motility and the Cytoskeleton},
volume = {35},
number = {1},
publisher = {Wiley Subscription Services, Inc., A Wiley Company},
issn = {1097-0169},
url = {http://dx.doi.org/10.1002/(SICI)1097-0169(1996)35:1<59::AID-CM5>3.0.CO;2-D},
doi = {10.1002/(SICI)1097-0169(1996)35:1<59::AID-CM5>3.0.CO;2-D},
pages = {59--67},
keywords = {dictyostelium, cytoskeleton, myosin II, side view microscopy},
year = {1996},
}

@misc{iweb,
author = {Ahuja, Dinkar and Nanda, Pariksheet},
title = {MCB 2225 Laboratory Blog},
url = {http://homepages.uconn.edu/~mb2225vc/MCB_2225/Cellbio6_files/Cellbio6/},
note = {Accessed: 2015-02-09},
month = feb,
year = 2015,
}


@inbook{KNUTH:LP:1992,
author = {Knuth, Donald E.},
title = {Literate Programming},
journal = {Lecture Notes},
number = {27},
publisher = {Stanford CSLI Publications},
isbn = {0-937073-80-6},
url = {http://www-cs-faculty.stanford.edu/~uno/lp.html},
year = {1992},
}

@incollection{ausubel_computer_2010,
	address = {Hoboken, NJ, USA},
	title = {Computer {Control} of {Microscopes} {Using} µ{Manager}},
	isbn = {0471142727, 9780471142720},
	url = {http://doi.wiley.com/10.1002/0471142727.mb1420s92},
	language = {en},
	urldate = {2015-02-24},
	booktitle = {Current {Protocols} in {Molecular} {Biology}},
	publisher = {John Wiley \& Sons, Inc.},
	author = {Edelstein, Arthur and Amodaj, Nenad and Hoover, Karl and Vale, Ron and Stuurman, Nico},
	editor = {Ausubel, Frederick M. and Brent, Roger and Kingston, Robert E. and Moore, David D. and Seidman, J.G. and Smith, John A. and Struhl, Kevin},
	month = oct,
	year = {2010}
}

@article{JBM36,
author = {Arthur Edelstein and Mark Tsuchida and Nenad Amodaj and Henry Pinkard and Ronald Vale and Nico Stuurman},
title = {Advanced methods of microscope control using μManager software},
journal = {Journal of Biological Methods},
volume = {1},
number = {2},
year = {2014},
keywords = {high-speed imaging, high-content screening, localization microscopy, Micro-Manager, open-source microscopy},
issn = {2326-9901},
url = {http://www.jbmethods.org/jbm/article/view/36},
}

@article{PER-GRA:2007,
author = {P\'erez, Fernando and Granger, Brian E.},
title = {{IP}ython: a System for Interactive Scientific Computing},
journal = {Computing in Science and Engineering},
volume = 9,
number = 3,
pages = {21--29},
month = may,
year = 2007,
url = "http://ipython.org",
issn = "1521-9615",
doi = {10.1109/MCSE.2007.53},
publisher = {IEEE Computer Society},
}

@Article{Hunter:2007,
  Author    = {Hunter, J. D.},
  Title     = {Matplotlib: A 2D graphics environment},
  Journal   = {Computing In Science \& Engineering},
  Volume    = {9},
  Number    = {3},
  Pages     = {90--95},
  abstract  = {Matplotlib is a 2D graphics package used for Python
  for application development, interactive scripting, and
  publication-quality image generation across user
  interfaces and operating systems.},
  publisher = {IEEE COMPUTER SOC},
  year      = 2007
}

@misc{stallman_gnu_2014,
	title = {The {GNU} {Project}},
	url = {https://www.gnu.org/gnu/the-gnu-project.html},
	urldate = {2015-04-17},
	author = {Stallman, Richard M.},
	month = may,
	year = {2014},
	file = {Snapshot:/home/omsai/tor-browser_en-US/Browser/TorBrowser/Data/Browser/profile.default/zotero/storage/BUB8AMVS/the-gnu-project.html:text/html}
}

@article{schindelin_fiji:_2012,
	title = {Fiji: an open-source platform for biological-image analysis},
	volume = {9},
	copyright = {© 2012 Nature Publishing Group, a division of Macmillan Publishers Limited. All Rights Reserved.},
	issn = {1548-7091},
	shorttitle = {Fiji},
	url = {http://www.nature.com/nmeth/journal/v9/n7/full/nmeth.2019.html},
	doi = {10.1038/nmeth.2019},
	abstract = {Fiji is a distribution of the popular open-source software ImageJ focused on biological-image analysis. Fiji uses modern software engineering practices to combine powerful software libraries with a broad range of scripting languages to enable rapid prototyping of image-processing algorithms. Fiji facilitates the transformation of new algorithms into ImageJ plugins that can be shared with end users through an integrated update system. We propose Fiji as a platform for productive collaboration between computer science and biology research communities.},
	language = {en},
	number = {7},
	urldate = {2015-04-19},
	journal = {Nature Methods},
	author = {Schindelin, Johannes and Arganda-Carreras, Ignacio and Frise, Erwin and Kaynig, Verena and Longair, Mark and Pietzsch, Tobias and Preibisch, Stephan and Rueden, Curtis and Saalfeld, Stephan and Schmid, Benjamin and Tinevez, Jean-Yves and White, Daniel James and Hartenstein, Volker and Eliceiri, Kevin and Tomancak, Pavel and Cardona, Albert},
	month = jul,
	year = {2012},
	pages = {676--682},
	file = {Full Text PDF:/home/omsai/tor-browser_en-US/Browser/TorBrowser/Data/Browser/profile.default/zotero/storage/CDCVP7Q7/Schindelin et al. - 2012 - Fiji an open-source platform for biological-image.pdf:application/pdf;Snapshot:/home/omsai/tor-browser_en-US/Browser/TorBrowser/Data/Browser/profile.default/zotero/storage/EUCQEUDS/nmeth.2019.html:text/html}
}