Data Wrangling & GAN
When using R I like using RStudio. I think it's the best IDE for R, and makes iterating on code very easy and quick. Within RStudio there is a package manager that can help you install the packages I have listed here:
Those two packages are used in get_gse_data.r, which can get any GSE, given the GSE ID and gene symbol column name.
NOTE: Using a virtual environment doesn't allows you to use matplotlib directly. You need to map it to your system's copy of matplotlib because the graphics libraries to create window frames is closely tied to the operating system.
The prominent packages are:
To install all the dependencies quickly and easily you should use
pip install -r requirements.txt
How to Run any Script
Just navigate to the folder containing the script, and run it directly.
If you're using RStudio, then all you need to do is source the script. There is a button for that in the top right corner of the editor window. Else from the command line:
R CMD BATCH <name_of_script>
Just run it directly from the command line. Assuming that you environment is prepared, and you have all the dependencies, all you have to do is