simulate sequences under JK model

sun13005 · Apr 22, 2017 · 60a48bf · 60a48bf
1 parent 20b581b
commit 60a48bf
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diff --git a/simSequences.py b/simSequences.py
@@ -89,7 +89,6 @@ def __str__(self):
 
         return 'node: number=%d edgelen=%g lchild=%s rsib=%s parent=%s descendants=[%s]' % (self.number, self.edgelen, lchildstr, rsibstr, parstr, descendants_as_string)
 
-
 def simulate(preorder, ntax,  num_sites, out):
     newf = open(out, 'w')
     newf.write('#nexus\n\n')
@@ -104,7 +103,6 @@ def simulate(preorder, ntax,  num_sites, out):
             newf.write('%s  %s\n' % (nd.number, ''.join(nd.simulateSequences(num_sites))))
     newf.write(';\n')
     newf.write('end;')
-
 def readnewick(tree):
     total_length = len(tree)
     internal_node_number = -1

diff --git a/tree_test.py b/tree_test.py