likelihood only

sun13005 · May 26, 2017 · 911f3d0 · 911f3d0
1 parent becd19b
commit 911f3d0
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Showing 9 changed files with 788 additions and 497 deletions.
diff --git a/readSeq.py → JC+GAMMA/readSeq.py b/readSeq.py → JC+GAMMA/readSeq.py
@@ -1,4 +1,4 @@
-def patterns(sequence_file):
+def patterns():
  # 
     import re, os, glob, itertools, fnmatch, sys, shutil
     from itertools import combinations
@@ -10,7 +10,7 @@ def patterns(sequence_file):
     genes = []
     data = {}
 #     print 'Reading nexus files...'
-    for filename in glob.glob(os.path.join(script_dir, sequence_file)):
+    for filename in glob.glob(os.path.join(script_dir, '*.nex')):
 
         m = re.match('(.+).nex', os.path.basename(filename))
         gene_name = m.group(1)

diff --git a/JC+GAMMA/readSeq.pyc b/JC+GAMMA/readSeq.pyc
diff --git a/readtree.py → JC+GAMMA/readtree.py b/readtree.py → JC+GAMMA/readtree.py
diff --git a/JC+GAMMA/simulated.nex b/JC+GAMMA/simulated.nex