Skip to content
master
Go to file
Code

Latest commit

 

Git stats

Files

Permalink
Failed to load latest commit information.
Type
Name
Latest commit message
Commit time
 
 
 
 

README.md

ErrorCorrection

Error Correction Algorithm for Biological Sequences

Please, compile the source code revised_ec.cpp with the following command using g++ compiler (gcc version 4.6.1 or above): g++ -O3 revised_ec.cpp -o ec

The command will produce an executable file named ec. Please, run the following command to correct the reads:

./ec <input_file_name> <output_file_name>

Please, note that input file will be FASTA file where the format of the file should be:

read_id read_string read_id read_string . . .

The corrected reads will be placed in output_file as FASTA format. If you want to tune the parameters, please, find initialize_parameters() function block at the beginning of the source code and change the parameters accordingly.

About

Error Correction Algorithm for Biological Sequences

Resources

Releases

No releases published

Languages

You can’t perform that action at this time.