properties.prop

(1) INDEX FOLDER PATH 
/home/sus11005/Data/CODE/SPLICED/DATA/NEW/MAIN_INDEX/chr
(2) MAP FILE PATH
/home/sus11005/Data/CODE/SPLICED/DATA/NEW/MAP/map_50.sam
(3) UMRQ FILE PATH
/home/sus11005/Data/CODE/SPLICED/DATA/NEW/MAP/umrs_50.fq
(4) UMRS FILE PATH
/home/sus11005/Data/CODE/SPLICED/DATA/NEW/MAP/umrs_50.fa
(5) READS FILE PATH
/home/sus11005/Data/CODE/SPLICED/DATA/NEW/READS/50.1.fastq
(6) COVERAGE FILE PATH
/home/sus11005/Data/CODE/SPLICED/DATA/NEW/MAP/coverage_50.cov
(7) NUMBER OF MISMATHES FOR FULL ALIGBMENT
2
(8) NUMBER OF MISMATCHES FOR GAPPED ALIGNMENT
1
(9) MAX NUMBER OF ALIGNMENT
100
(10) NUMBER OF THREADS TO BE USED BY BOWTIE
10
(11) LENGTH OF CONSENSUS
108
(12) NAME OF THE SEQUENCE
chr1
(13) PRE-PROCESS
off
(14) HAMMING DISTANCE THRESHOLD
1.2
(15) SEARCH SPACE LENGTH
60000
(16) MAX RELATIVE ALIGNMENT
10
(17) SEQUENCE FILE FOLDER
/home/sus11005/Data/CODE/ERGC/TAR/HG19/
(18) OVERLAP LENGTH
48
(19) OVERLAP HAMMING DISTANCE
2
(20) NUMBER OF THREADS TO BE USED BY POMP
1