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submission 2, unsure if step 3 worked appropriately
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Amanda Wadams {amanda.wadams@uconn.edu}
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Feb 25, 2020
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,30 @@ | ||
| 2020-02-25 09:52:09 - bidscoin - WARNING Existing BIDS output-directory found, which may result in duplicate data (with increased run-index). Make sure /data/bids/sub-TD902TD/ was cleaned-up from old data before (re)running the bidscoiner | ||
| 2020-02-25 09:52:14 - bidscoin - ERROR Failed to run /usr/local/bin/dcm2niix -b y -z y -i n -f "sub-TD902TD_acq-AAHeadScout_dir-ROW_run-3_echo-1" -o "/data/bids/sub-TD902TD/extra_data" "/data/raw/sub-TD902TD/001-AAHead_Scout" (errorcode 0) | ||
| 2020-02-25 09:52:14 - bidscoin - ERROR Failed to run /usr/local/bin/dcm2niix -b y -z y -i n -f "sub-TD902TD_acq-AAHeadScoutMPRsag_dir-InPlanePhaseEncodingDirection_run-1_echo-1" -o "/data/bids/sub-TD902TD/extra_data" "/data/raw/sub-TD902TD/002-AAHead_Scout_MPR_sag" (errorcode 0) | ||
| 2020-02-25 09:52:14 - bidscoin - ERROR Failed to run /usr/local/bin/dcm2niix -b y -z y -i n -f "sub-TD902TD_acq-AAHeadScoutMPRcor_dir-InPlanePhaseEncodingDirection_run-1_echo-1" -o "/data/bids/sub-TD902TD/extra_data" "/data/raw/sub-TD902TD/003-AAHead_Scout_MPR_cor" (errorcode 0) | ||
| 2020-02-25 09:52:15 - bidscoin - ERROR Failed to run /usr/local/bin/dcm2niix -b y -z y -i n -f "sub-TD902TD_acq-AAHeadScoutMPRtra_dir-InPlanePhaseEncodingDirection_run-1_echo-1" -o "/data/bids/sub-TD902TD/extra_data" "/data/raw/sub-TD902TD/004-AAHead_Scout_MPR_tra" (errorcode 0) | ||
| 2020-02-25 09:52:21 - bidscoin - ERROR Failed to run /usr/local/bin/dcm2niix -b y -z y -i n -f "sub-TD902TD_run-3_T1w" -o "/data/bids/sub-TD902TD/anat" "/data/raw/sub-TD902TD/005-T1w" (errorcode 0) | ||
| 2020-02-25 09:52:21 - bidscoin - ERROR Failed to run /usr/local/bin/dcm2niix -b y -z y -i n -f "sub-TD902TD_task-taskmusic_acq-epfid2d184_dir-COL_run-3_echo-1_sbref" -o "/data/bids/sub-TD902TD/func" "/data/raw/sub-TD902TD/006-task-music_SBRef" (errorcode 0) | ||
| 2020-02-25 09:52:53 - bidscoin - ERROR Failed to run /usr/local/bin/dcm2niix -b y -z y -i n -f "sub-TD902TD_task-taskmusic_acq-epfid2d184_dir-COL_run-3_echo-1_bold" -o "/data/bids/sub-TD902TD/func" "/data/raw/sub-TD902TD/007-task-music" (errorcode 0) | ||
| 2020-02-25 09:52:53 - bidscoin - ERROR Failed to run /usr/local/bin/dcm2niix -b y -z y -i n -f "sub-TD902TD_acq-taskmusicPhysioLog_dir-InPlanePhaseEncodingDirection_run-1_echo-EchoNumbers" -o "/data/bids/sub-TD902TD/extra_data" "/data/raw/sub-TD902TD/008-task-music_PhysioLog" (errorcode 2) | ||
| 2020-02-25 09:52:53 - bidscoin - ERROR Failed to run /usr/local/bin/dcm2niix -b y -z y -i n -f "sub-TD902TD_task-taskprosody_acq-epfid2d184_dir-COL_run-5_echo-1_sbref" -o "/data/bids/sub-TD902TD/func" "/data/raw/sub-TD902TD/009-task-prosody_SBRef" (errorcode 0) | ||
| 2020-02-25 09:52:54 - bidscoin - ERROR Failed to run /usr/local/bin/dcm2niix -b y -z y -i n -f "sub-TD902TD_task-taskprosody_acq-epfid2d184_dir-COL_run-5_echo-1_bold" -o "/data/bids/sub-TD902TD/func" "/data/raw/sub-TD902TD/010-task-prosody" (errorcode 0) | ||
| 2020-02-25 09:52:54 - bidscoin - ERROR Failed to run /usr/local/bin/dcm2niix -b y -z y -i n -f "sub-TD902TD_acq-taskprosodyPhysioLog_dir-InPlanePhaseEncodingDirection_run-1_echo-EchoNumbers" -o "/data/bids/sub-TD902TD/extra_data" "/data/raw/sub-TD902TD/011-task-prosody_PhysioLog" (errorcode 2) | ||
| 2020-02-25 09:52:54 - bidscoin - ERROR Failed to run /usr/local/bin/dcm2niix -b y -z y -i n -f "sub-TD902TD_task-taskprosody_acq-epfid2d184_dir-COL_run-6_echo-1_sbref" -o "/data/bids/sub-TD902TD/func" "/data/raw/sub-TD902TD/012-task-prosody_SBRef" (errorcode 0) | ||
| 2020-02-25 09:53:34 - bidscoin - ERROR Failed to run /usr/local/bin/dcm2niix -b y -z y -i n -f "sub-TD902TD_task-taskprosody_acq-epfid2d184_dir-COL_run-6_echo-1_bold" -o "/data/bids/sub-TD902TD/func" "/data/raw/sub-TD902TD/013-task-prosody" (errorcode 0) | ||
| 2020-02-25 09:53:34 - bidscoin - ERROR Failed to run /usr/local/bin/dcm2niix -b y -z y -i n -f "sub-TD902TD_acq-taskprosodyPhysioLog_dir-InPlanePhaseEncodingDirection_run-1_echo-EchoNumbers" -o "/data/bids/sub-TD902TD/extra_data" "/data/raw/sub-TD902TD/014-task-prosody_PhysioLog" (errorcode 2) | ||
| 2020-02-25 09:53:34 - bidscoin - WARNING Cannot find dicom files in:/data/raw/sub-TD902TD/1 | ||
| 2020-02-25 09:53:34 - bidscoin - WARNING Cannot find dicom files in:/data/raw/sub-TD902TD/10 | ||
| 2020-02-25 09:53:34 - bidscoin - WARNING Cannot find dicom files in:/data/raw/sub-TD902TD/11 | ||
| 2020-02-25 09:53:34 - bidscoin - WARNING Cannot find dicom files in:/data/raw/sub-TD902TD/12 | ||
| 2020-02-25 09:53:34 - bidscoin - WARNING Cannot find dicom files in:/data/raw/sub-TD902TD/13 | ||
| 2020-02-25 09:53:34 - bidscoin - WARNING Cannot find dicom files in:/data/raw/sub-TD902TD/14 | ||
| 2020-02-25 09:53:34 - bidscoin - WARNING Cannot find dicom files in:/data/raw/sub-TD902TD/2 | ||
| 2020-02-25 09:53:34 - bidscoin - WARNING Cannot find dicom files in:/data/raw/sub-TD902TD/3 | ||
| 2020-02-25 09:53:34 - bidscoin - WARNING Cannot find dicom files in:/data/raw/sub-TD902TD/4 | ||
| 2020-02-25 09:53:34 - bidscoin - WARNING Cannot find dicom files in:/data/raw/sub-TD902TD/5 | ||
| 2020-02-25 09:53:34 - bidscoin - WARNING Cannot find dicom files in:/data/raw/sub-TD902TD/6 | ||
| 2020-02-25 09:53:34 - bidscoin - WARNING Cannot find dicom files in:/data/raw/sub-TD902TD/7 | ||
| 2020-02-25 09:53:34 - bidscoin - WARNING Cannot find dicom files in:/data/raw/sub-TD902TD/8 | ||
| 2020-02-25 09:53:34 - bidscoin - WARNING Cannot find dicom files in:/data/raw/sub-TD902TD/9 | ||
| 2020-02-25 09:53:34 - bidscoin - WARNING Cannot find dicom files in:/data/raw/sub-TD902TD/9 |
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