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Initial commit. Finished making the initial datasets,

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rjm11010 committed Dec 6, 2017
0 parents commit 65f7e1fd62830b0c342e3d0df07b65cdca1fad85
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  1. +2 −0 gan/gan.py
  2. +5 −0 mkdataset/class_data/cod.txt
  3. +54,683 −0 mkdataset/class_data/csv/GSE11954_Sumaira.csv
  4. +46,622 −0 mkdataset/class_data/csv/GSE14367_Sheng.csv
  5. +25,704 −0 mkdataset/class_data/csv/GSE25583_Xi.csv
  6. +27,372 −0 mkdataset/class_data/csv/GSE33161_Symbol_Class4.csv
  7. +45,048 −0 mkdataset/class_data/csv/GSE34949_Symbol_Class2.csv
  8. +35,563 −0 mkdataset/class_data/csv/GSE40041_Bineet.csv
  9. +22,530 −0 mkdataset/class_data/csv/GSE41579Kingsley.csv
  10. +22,530 −0 mkdataset/class_data/csv/GSE41579_Honglin.csv
  11. +25,703 −0 mkdataset/class_data/csv/GSE45612_SHAOYAN.csv
  12. +35,573 −0 mkdataset/class_data/csv/GSE51882_Symbol.Class1.csv
  13. +45,288 −0 mkdataset/class_data/csv/GSE52253_Reynaldo.csv
  14. +35,567 −0 mkdataset/class_data/csv/GSE57290_Qi.csv
  15. +62,984 −0 mkdataset/class_data/csv/GSE58875_Lu.csv
  16. +49,395 −0 mkdataset/class_data/csv/GSE68000_Youngsun.csv
  17. +49,394 −0 mkdataset/class_data/csv/GSE68001_Yenhsiang.csv
  18. +33,303 −0 mkdataset/class_data/csv/GSE76161_Pujan.csv
  19. +35,563 −0 mkdataset/class_data/csv/GSE76162_Chenyu.csv
  20. +39,435 −0 mkdataset/class_data/csv/GSE76843_ARAVIND.csv
  21. +45,109 −0 mkdataset/class_data/csv/GSE93819_Yufan.csv
  22. +14 −0 mkdataset/class_data/csv/clean.sh
  23. +54,676 −0 mkdataset/class_data/csv/clean_csv/GSE11954.csv
  24. +46,616 −0 mkdataset/class_data/csv/clean_csv/GSE14367.csv
  25. +25,698 −0 mkdataset/class_data/csv/clean_csv/GSE25583.csv
  26. +27,361 −0 mkdataset/class_data/csv/clean_csv/GSE33161.csv
  27. +45,038 −0 mkdataset/class_data/csv/clean_csv/GSE34949.csv
  28. +35,557 −0 mkdataset/class_data/csv/clean_csv/GSE40041.csv
  29. +22,524 −0 mkdataset/class_data/csv/clean_csv/GSE41579.csv
  30. +25,698 −0 mkdataset/class_data/csv/clean_csv/GSE45612.csv
  31. +35,562 −0 mkdataset/class_data/csv/clean_csv/GSE51882.csv
  32. +45,282 −0 mkdataset/class_data/csv/clean_csv/GSE52253.csv
  33. +35,557 −0 mkdataset/class_data/csv/clean_csv/GSE57290.csv
  34. +49,387 −0 mkdataset/class_data/csv/clean_csv/GSE68000.csv
  35. +49,387 −0 mkdataset/class_data/csv/clean_csv/GSE68001.csv
  36. +33,298 −0 mkdataset/class_data/csv/clean_csv/GSE76161.csv
  37. +35,557 −0 mkdataset/class_data/csv/clean_csv/GSE76162.csv
  38. +39,430 −0 mkdataset/class_data/csv/clean_csv/GSE76843.csv
  39. +45,102 −0 mkdataset/class_data/csv/clean_csv/GSE93819.csv
  40. +62,978 −0 mkdataset/class_data/csv/clean_csv/not_suitable/GSE58875.csv
  41. +54,676 −0 mkdataset/class_data/csv/clean_csv/without_id/GSE11954_Sumaira.csv
  42. +46,616 −0 mkdataset/class_data/csv/clean_csv/without_id/GSE14367_Sheng.csv
  43. +25,698 −0 mkdataset/class_data/csv/clean_csv/without_id/GSE25583_Xi.csv
  44. +27,361 −0 mkdataset/class_data/csv/clean_csv/without_id/GSE33161_Symbol_Class4.csv
  45. +45,038 −0 mkdataset/class_data/csv/clean_csv/without_id/GSE34949_Symbol_Class2.csv
  46. +35,557 −0 mkdataset/class_data/csv/clean_csv/without_id/GSE40041_Bineet.csv
  47. +22,524 −0 mkdataset/class_data/csv/clean_csv/without_id/GSE41579Kingsley.csv
  48. +22,524 −0 mkdataset/class_data/csv/clean_csv/without_id/GSE41579_Honglin.csv
  49. +25,698 −0 mkdataset/class_data/csv/clean_csv/without_id/GSE45612_SHAOYAN.csv
  50. +35,562 −0 mkdataset/class_data/csv/clean_csv/without_id/GSE51882_Symbol.Class1.csv
  51. +45,282 −0 mkdataset/class_data/csv/clean_csv/without_id/GSE52253_Reynaldo.csv
  52. +35,557 −0 mkdataset/class_data/csv/clean_csv/without_id/GSE57290_Qi.csv
  53. +62,978 −0 mkdataset/class_data/csv/clean_csv/without_id/GSE58875_Lu.csv
  54. +49,387 −0 mkdataset/class_data/csv/clean_csv/without_id/GSE68000_Youngsun.csv
  55. +49,387 −0 mkdataset/class_data/csv/clean_csv/without_id/GSE68001_Yenhsiang.csv
  56. +33,298 −0 mkdataset/class_data/csv/clean_csv/without_id/GSE76161_Pujan.csv
  57. +35,557 −0 mkdataset/class_data/csv/clean_csv/without_id/GSE76162_Chenyu.csv
  58. +39,430 −0 mkdataset/class_data/csv/clean_csv/without_id/GSE76843_ARAVIND.csv
  59. +45,102 −0 mkdataset/class_data/csv/clean_csv/without_id/GSE93819_Yufan.csv
  60. +54,676 −0 mkdataset/class_data/csv/clean_csv/without_log2/GSE11954.csv
  61. +46,616 −0 mkdataset/class_data/csv/clean_csv/without_log2/GSE14367.csv
  62. +25,698 −0 mkdataset/class_data/csv/clean_csv/without_log2/GSE25583.csv
  63. +27,361 −0 mkdataset/class_data/csv/clean_csv/without_log2/GSE33161.csv
  64. +45,038 −0 mkdataset/class_data/csv/clean_csv/without_log2/GSE34949.csv
  65. +35,557 −0 mkdataset/class_data/csv/clean_csv/without_log2/GSE40041.csv
  66. +22,524 −0 mkdataset/class_data/csv/clean_csv/without_log2/GSE41579.csv
  67. +25,698 −0 mkdataset/class_data/csv/clean_csv/without_log2/GSE45612.csv
  68. +35,562 −0 mkdataset/class_data/csv/clean_csv/without_log2/GSE51882.csv
  69. +45,282 −0 mkdataset/class_data/csv/clean_csv/without_log2/GSE52253.csv
  70. +35,557 −0 mkdataset/class_data/csv/clean_csv/without_log2/GSE57290.csv
  71. +62,978 −0 mkdataset/class_data/csv/clean_csv/without_log2/GSE58875.csv
  72. +49,387 −0 mkdataset/class_data/csv/clean_csv/without_log2/GSE68000.csv
  73. +49,387 −0 mkdataset/class_data/csv/clean_csv/without_log2/GSE68001.csv
  74. +33,298 −0 mkdataset/class_data/csv/clean_csv/without_log2/GSE76161.csv
  75. +35,557 −0 mkdataset/class_data/csv/clean_csv/without_log2/GSE76162.csv
  76. +39,430 −0 mkdataset/class_data/csv/clean_csv/without_log2/GSE76843.csv
  77. +45,102 −0 mkdataset/class_data/csv/clean_csv/without_log2/GSE93819.csv
  78. +7 −0 mkdataset/class_data/csv/clean_csv/without_log2/rename_files.sh
  79. BIN mkdataset/class_data/excel/GSE11954_Sumaira.xlsx
  80. BIN mkdataset/class_data/excel/GSE14367_Sheng.xlsx
  81. BIN mkdataset/class_data/excel/GSE25583 Xi.xlsx
  82. BIN mkdataset/class_data/excel/GSE33161_Symbol_Class4.xlsx
  83. BIN mkdataset/class_data/excel/GSE34949_Symbol_Class2.xlsx
  84. BIN mkdataset/class_data/excel/GSE38199_Symbol_Class3.xlsx
  85. BIN mkdataset/class_data/excel/GSE40041_Bineet.xlsx
  86. BIN mkdataset/class_data/excel/GSE41579Kingsley.xlsx
  87. BIN mkdataset/class_data/excel/GSE41579_Honglin.xlsx
  88. BIN mkdataset/class_data/excel/GSE45612_SHAOYAN.xlsx
  89. BIN mkdataset/class_data/excel/GSE51882_Symbol.Class1.xlsx
  90. BIN mkdataset/class_data/excel/GSE52253_Reynaldo.xlsx
  91. BIN mkdataset/class_data/excel/GSE57290_Qi.xlsx
  92. BIN mkdataset/class_data/excel/GSE58875_Lu.xlsx
  93. BIN mkdataset/class_data/excel/GSE68000_Youngsun.xlsx
  94. BIN mkdataset/class_data/excel/GSE68001_Yenhsiang.xlsx
  95. BIN mkdataset/class_data/excel/GSE76161_Pujan.xlsx
  96. BIN mkdataset/class_data/excel/GSE76162_Chenyu.xlsm
  97. BIN mkdataset/class_data/excel/GSE76843_ARAVIND.xlsx
  98. BIN mkdataset/class_data/excel/GSE93819_Yufan.xlsx
  99. +16,186 −0 mkdataset/class_data/gse70559_log2ratio_data.csv
  100. +23 −0 mkdataset/class_data/metadata/gse_metadata.csv
  101. BIN mkdataset/class_data/metadata/gse_metadata.xlsx
  102. +187 −0 mkdataset/datasets/human_and_mouse_dataset.csv
  103. +49 −0 mkdataset/datasets/human_and_mouse_dataset_log2_ratio.csv
  104. +21 −0 mkdataset/datasets/human_dataset.csv
  105. +11 −0 mkdataset/datasets/human_dataset_log2_ratio.csv
  106. +187 −0 mkdataset/datasets/human_mouse_dataset.csv
  107. +167 −0 mkdataset/datasets/mouse_dataset.csv
  108. +43 −0 mkdataset/datasets/mouse_dataset_log2_ratio.csv
  109. +366 −0 mkdataset/datasets/tham_human_and_mouse_dataset.csv
  110. +13 −0 mkdataset/get_gene_intersection_list.r
  111. +31 −0 mkdataset/get_gse_data.r
  112. +2,085 −0 mkdataset/human_mouse_gene_lists/all_genes.csv
  113. +5 −0 mkdataset/human_mouse_gene_lists/clean_mouse_genes.sh
  114. +2,016 −0 mkdataset/human_mouse_gene_lists/human_genes.csv
  115. +70 −0 mkdataset/human_mouse_gene_lists/mouse_genes.csv
  116. +2,074 −0 mkdataset/human_mouse_gene_lists/new_mouse.csv
  117. +2,074 −0 mkdataset/human_mouse_gene_lists/new_mouse_clean.csv
  118. +37 −0 mkdataset/mkdataset.py
  119. +104 −0 mkdataset/mkdataset.r
  120. +82 −0 mkdataset/mkdataset_log2_columns.r
  121. +57 −0 mkdataset/prep_thams_data.r
@@ -0,0 +1,2 @@
import numpy as np
import pandas as pd
@@ -0,0 +1,5 @@
I like pizza
turtle // soup is not for turtles
pizza//can't eat
davda dkalc alkd
kal-a-d a

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